Rroxscaffold_3G00231630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0021722
Physical Location & Seq
Forward (+)
16909293 .. 16912654
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231630.1

Sequence Viewer

Length: 402 bp
ATGGGCATTTCTCGGCCATCATTGCCACACTCCATCGTCGAGCCCTATGCCTCTATCGTCGCCGTCGTCGTTCTCGTCCGGTGCAACAAACTCGGAGACTTCTTGATCTCTATCCAGCCAAAACCCGACCTCTACTCCACCGTAGTCGTCCACAACGATGATGATTCCAACTCGAATCCGAGTGAGACCGAAACAACGACGACGCGGCAATTTCAAGATCTCCACGGACAAAGAACCCGACCCGTATGCTCGCGACGAAGCCGACGACTCCTCCACCCTCCCTCTACTCCTCAAACGCCTCCCAAGGACTTCGGTAGCGGCGCCTCCCTCAACTACTTCGACGACAACGACGGCGATTTCTCGCTCCGTGATCGTCAAGAGCGACCGCAATCGGACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.93

Weight (kDa)

6.17

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021722)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_2G00120710 Rroxscaffold_3G00231630 Rroxscaffold_3G00250180 Rroxscaffold_4G00284420
rosa_samantha Rh4AG035800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 2 cut(s) 205, 253
AciI CCGC 3 cut(s) 205, 318, 386
AcoI YGGCCR 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 321
AgsI TTSAA 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 90, 179
AoxI GGCC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 394
AvaII GGWCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 45
BccI CCATC 2 cut(s) 25, 41
BceAI ACGGC 2 cut(s) 47, 367
BcgI CGANNNNNNTGC 6 cut(s) 29, 63, 73, 107, 228, 262
BcoDI GTCTC 2 cut(s) 90, 179
BfaI CTAG 1 cut(s) 400
BfoI RGCGCY 1 cut(s) 324
BglII AGATCT 1 cut(s) 217
BisI GCNGC 2 cut(s) 206, 319
BlsI GCNGC 2 cut(s) 207, 320
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 223, 303
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 255, 285
Bse3DI GCAATG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 223, 303
BseJI GATNNNNATC 1 cut(s) 110
BseMI GCAATG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 260, 279
Bsh1236I CGCG 2 cut(s) 205, 253
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 90, 179
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 105, 217, 370
Bsp68I TCGCGA 1 cut(s) 253
BspACI CCGC 3 cut(s) 205, 318, 386
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 2 cut(s) 205, 253
BspLI GGNNCC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 223, 303
BssMI GATC 3 cut(s) 105, 217, 370
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 223
BstFNI CGCG 2 cut(s) 205, 253
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 3 cut(s) 108, 220, 373
BstMAI GTCTC 2 cut(s) 90, 179
BstMBI GATC 3 cut(s) 105, 217, 370
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstUI CGCG 2 cut(s) 205, 253
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 223
BtuMI TCGCGA 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 251
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 1 cut(s) 211
CviJI RGCY 4 cut(s) 16, 43, 118, 261
CviKI_1 RGCY 4 cut(s) 16, 43, 118, 261
DinI GGCGCC 1 cut(s) 322
DpnI GATC 3 cut(s) 107, 219, 372
DpnII GATC 3 cut(s) 105, 217, 370
EaeI YGGCCR 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 303
FaiI YATR 2 cut(s) 48, 247
Fnu4HI GCNGC 2 cut(s) 206, 319
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 206, 319
FspBI CTAG 1 cut(s) 400
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 206, 319
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 321
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 3 cut(s) 164, 175, 267
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 95, 180, 394
Hpy188III TCNNGA 4 cut(s) 103, 215, 252, 377
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 321
HspAI GCGC 1 cut(s) 321
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 3 cut(s) 105, 217, 370
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 2 cut(s) 92, 128
MaeI CTAG 1 cut(s) 400
MalI GATC 3 cut(s) 107, 219, 372
MboI GATC 3 cut(s) 105, 217, 370
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 209
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 9 cut(s) 61, 140, 281, 288, 292, 300, 309, 334, 338
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 205, 253
MwoI GCNNNNNNNGC 1 cut(s) 22
NarI GGCGCC 1 cut(s) 321
NdeII GATC 3 cut(s) 105, 217, 370
NlaIV GGNNCC 1 cut(s) 322
NruI TCGCGA 1 cut(s) 253
PcsI WCGNNNNNNNCGW 7 cut(s) 63, 66, 72, 153, 262, 345, 379
PfeI GAWTC 2 cut(s) 164, 175
PkrI GCNGC 2 cut(s) 207, 320
PleI GAGTC 1 cut(s) 261
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 217
RruI TCGCGA 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 2 cut(s) 206, 319
Sau3AI GATC 3 cut(s) 105, 217, 370
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 261
SduI GDGCHC 1 cut(s) 45
SetI ASST 1 cut(s) 132
SfoI GGCGCC 1 cut(s) 322
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 1 cut(s) 209
SsiI CCGC 3 cut(s) 205, 318, 386
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 3 cut(s) 39, 173, 339
TaqII GACCGA 1 cut(s) 203
TasI AATT 1 cut(s) 209
TauI GCSGC 2 cut(s) 208, 321
TfiI GAWTC 2 cut(s) 164, 175
TspGWI ACGGA 2 cut(s) 240, 356
VpaK11BI GGWCC 1 cut(s) 394
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.