Rroxscaffold_3G00250180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0021722
Physical Location & Seq
Forward (+)
44020175 .. 44023510
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250180.1

Sequence Viewer

Length: 723 bp
ATGATTCCAACTCGAATTCCACCGAGACCGAAACAAGCAGCAACGCGGCAATTTCAAGAGCTCCACCGACCAAGAACCAAACCCATATGCCACATTCGTCTACGACGACTACTCCTCCCTCCCTCCGCTCCTCAAACGCCTCCCAAGGACTTCGGCGGCGACCCCTCCCTCAACTACTTCAAAGACGAGGACGAGAACGTGCGGAGTGGCACTTGTCGGGGGGCCCACCCCCGTGCTTGTGGTAACGCGCCACCGCGTCGGGCATCGGGGAGGTTCTTCTTTGAGAACATGAATAAAATTAAGGAAGGGTCTTGGCTGCGTTCGGAGTCTTCCCTAGTAGTGTCAAGGTTACTCGAATCATTGGAGCTTAACCCTATGGTTACATTATGTTTGAGTAGTCTAGAGCCTCGCTTTAGATTATTCATTCATGGCTCTCTTTTGTCATTACCCGGAGTTCGGACTACAAGTAAGTCTAAACAAAAGACGCCACAGGCCAAAGTCCACACAAGTGGCCACTCAAGAACTTACCAGCAAATAGAAGGACGCTGCAATAGCGTCATTGCCACCGTGATGAAAATTGCACGACACTGGACAATCAGCGGTTATCGAGAGATCTTGAGAGGAACCGATGACAAATTCATTCCATATACACATATAACAACAACATTCAAATCAATTCAGCATTGGAGATCTTCTTTTATGATCGAAAGAACAAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.5

Weight (kDa)

10.57

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021722)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_2G00120710 Rroxscaffold_3G00231630 Rroxscaffold_3G00250180 Rroxscaffold_4G00284420
rosa_samantha Rh4AG035800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 100
AccII CGCG 3 cut(s) 46, 248, 256
AciI CCGC 6 cut(s) 46, 126, 156, 202, 254, 600
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 2 cut(s) 15, 635
AcyI GRCGYC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 3 cut(s) 56, 181, 670
AleI CACNNNNGTG 2 cut(s) 231, 507
AluBI AGCT 2 cut(s) 61, 367
AluI AGCT 2 cut(s) 61, 367
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 3 cut(s) 222, 492, 511
ApaI GGGCCC 1 cut(s) 226
ApeKI GCWGC 3 cut(s) 38, 316, 546
ApoI RAATTY 2 cut(s) 15, 635
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 222, 223
AsuC2I CCSGG 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 513
BanII GRGCYC 2 cut(s) 63, 226
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 50, 303, 533
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 2 cut(s) 335, 401
BglII AGATCT 2 cut(s) 612, 689
BisI GCNGC 5 cut(s) 39, 47, 157, 317, 547
BlsI GCNGC 5 cut(s) 40, 48, 158, 318, 548
Bme1390I CCNGG 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 222, 223
BmiI GGNNCC 3 cut(s) 223, 224, 625
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 502, 637
BpuMI CCSGG 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 485
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 4 cut(s) 96, 99, 126, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 593
Bse3DI GCAATG 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 2 cut(s) 104, 120
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 3 cut(s) 50, 303, 533
Bsh1236I CGCG 3 cut(s) 46, 248, 256
BshFI GGCC 3 cut(s) 224, 494, 513
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 3 cut(s) 224, 494, 513
Bso31I GGTCTC 1 cut(s) 19
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 63, 226
Bsp143I GATC 3 cut(s) 612, 689, 702
BspACI CCGC 6 cut(s) 46, 126, 156, 202, 254, 600
BspANI GGCC 3 cut(s) 224, 494, 513
BspFNI CGCG 3 cut(s) 46, 248, 256
BspLI GGNNCC 3 cut(s) 223, 224, 625
BspTNI GGTCTC 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 612, 689, 702
BssNI GRCGYC 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 568
BstACI GRCGYC 1 cut(s) 485
BstFNI CGCG 3 cut(s) 46, 248, 256
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 615, 692, 705
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 3 cut(s) 612, 689, 702
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 3 cut(s) 46, 248, 256
BstV1I GCAGC 3 cut(s) 50, 303, 533
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 2 cut(s) 612, 689
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 2 cut(s) 612, 689
BsuRI GGCC 3 cut(s) 224, 494, 513
BtsIMutI CAGTG 1 cut(s) 586
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 222, 223
CseI GACGC 4 cut(s) 245, 493, 544, 552
CviAII CATG 2 cut(s) 289, 428
CviJI RGCY 8 cut(s) 61, 224, 316, 367, 406, 432, 494, 513
CviKI_1 RGCY 8 cut(s) 61, 224, 316, 367, 406, 432, 494, 513
DpnI GATC 3 cut(s) 614, 691, 704
DpnII GATC 3 cut(s) 612, 689, 702
EaeI YGGCCR 1 cut(s) 511
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 2 cut(s) 63, 226
Eco31I GGTCTC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 2 cut(s) 63, 226
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 292, 431
FatI CATG 2 cut(s) 288, 427
FauNDI CATATG 1 cut(s) 86
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 5 cut(s) 39, 47, 157, 317, 547
FriOI GRGCYC 2 cut(s) 63, 226
Fsp4HI GCNGC 5 cut(s) 39, 47, 157, 317, 547
FspBI CTAG 2 cut(s) 335, 401
GlaI GCGC 1 cut(s) 249
GluI GCNGC 5 cut(s) 39, 47, 157, 317, 547
HaeIII GGCC 3 cut(s) 224, 494, 513
HapII CCGG 1 cut(s) 450
HgaI GACGC 4 cut(s) 245, 493, 544, 552
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 2 cut(s) 292, 431
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 3 cut(s) 4, 326, 356
HpaII CCGG 1 cut(s) 450
Hpy166II GTNNAC 2 cut(s) 101, 502
Hpy188I TCNGA 2 cut(s) 325, 459
Hpy188III TCNNGA 5 cut(s) 56, 401, 519, 608, 616
Hpy8I GTNNAC 2 cut(s) 101, 502
Hpy99I CGWCG 2 cut(s) 108, 261
HpyAV CCTTC 2 cut(s) 299, 533
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 549, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 2 cut(s) 292, 431
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 612, 689, 702
LmnI GCTCC 3 cut(s) 66, 133, 364
LpnPI CCDG 4 cut(s) 463, 476, 542, 574
Lsp1109I GCAGC 3 cut(s) 50, 303, 533
LweI GCATC 1 cut(s) 272
MaeI CTAG 2 cut(s) 335, 401
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 242, 348, 379
MalI GATC 3 cut(s) 614, 691, 704
MbiI CCGCTC 1 cut(s) 128
MboI GATC 3 cut(s) 612, 689, 702
MboII GAAGA 3 cut(s) 268, 321, 684
MflI RGATCY 2 cut(s) 612, 689
MhlI GDGCHC 2 cut(s) 63, 226
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 6 cut(s) 15, 50, 297, 576, 635, 675
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 2 cut(s) 300, 369
MslI CAYNNNNRTG 3 cut(s) 231, 507, 569
Msp20I TGGCCA 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 600
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 450
MvnI CGCG 3 cut(s) 46, 248, 256
MwoI GCNNNNNNNGC 1 cut(s) 552
NciI CCSGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 86
NdeII GATC 3 cut(s) 612, 689, 702
NlaIII CATG 2 cut(s) 292, 431
NlaIV GGNNCC 3 cut(s) 223, 224, 625
OliI CACNNNNGTG 2 cut(s) 231, 507
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 2 cut(s) 4, 356
PkrI GCNGC 5 cut(s) 40, 48, 158, 318, 548
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 223, 224, 625
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 222, 223
PsuI RGATCY 2 cut(s) 612, 689
RseI CAYNNNNRTG 3 cut(s) 231, 507, 569
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 300, 369
SatI GCNGC 5 cut(s) 39, 47, 157, 317, 547
Sau3AI GATC 3 cut(s) 612, 689, 702
Sau96I GGNCC 2 cut(s) 222, 223
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 2 cut(s) 63, 226
SetI ASST 5 cut(s) 63, 201, 275, 350, 369
SfaNI GCATC 1 cut(s) 272
SmiMI CAYNNNNRTG 3 cut(s) 231, 507, 569
SmlI CTYRAG 2 cut(s) 517, 616
SmoI CTYRAG 2 cut(s) 517, 616
Sse9I AATT 6 cut(s) 15, 50, 297, 576, 635, 675
SsiI CCGC 6 cut(s) 46, 126, 156, 202, 254, 600
SspMI CTAG 2 cut(s) 335, 401
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 1 cut(s) 201
TaqI TCGA 4 cut(s) 13, 354, 607, 705
TaqII GACCGA 1 cut(s) 43
TasI AATT 6 cut(s) 15, 50, 297, 576, 635, 675
TauI GCSGC 2 cut(s) 49, 159
TfiI GAWTC 2 cut(s) 4, 356
Tru1I TTAA 2 cut(s) 300, 369
Tru9I TTAA 2 cut(s) 300, 369
TscAI CASTG 1 cut(s) 593
TseI GCWGC 3 cut(s) 38, 316, 546
TspDTI ATGAA 5 cut(s) 305, 412, 416, 587, 628
TspRI CASTG 1 cut(s) 593
XapI RAATTY 2 cut(s) 15, 635
XbaI TCTAGA 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 2 cut(s) 335, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.