Rroxscaffold_2G00150100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
87550778 .. 87553260
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150100.1

Sequence Viewer

Length: 1479 bp
ATGGCAGGAGGGTTTGGAGGAGCAGAAGTTCTACATGAGAGGGCTCAACACTATGAGCATAGAATTACTTGGTATTTCATCTTTACTTGCATTATTGCAGCTCTCGGAGGCTCTCTCTTTGGCTATGATCTTGGTGTTTCAGATATCAGCAAATCTTGTGACCATGTTTGTCAGACTGAGATCCTGACACTCTTCACATCCTCTTTGTACTTTGCTGGCCTGATTTCAACATTTGGAGCTTCCTATGTTACCCGAAGCAAAGGCAGGAAAGCCAGCATCATTGTTGGATCAATCAGCTTCTTCTTAGGAGCGGTCCTCAATGCTTCTGCTAAAAACATATTAATGTTGATCTTGGGACGAATATTTCTTGGTGTTGGCATTGGATTCGGAAATCAAGCAGTTCCGTTGTACCTCTCAGAAATGGCTCCTGCAAAAATTCGAGGTGCAATTAACCAACTTTTCCAGCTGACTACCTGCTTGGGGATTTTGATAGCCAACTTGATCAATTACTTTACTGCAAAGATTCATCCATGGGGTTGGAGACTGTCGCTTGGTTTAGCTGCAGTGCCGGCAATTCTTATGTTTGTTGGGGGTCTCTTTCTTCCTGAGACCCCAAACAGTCTTGTAGAACAAGGCAGATTAGAAGAAGGAAGAAGGATACTGGAGAAAGTGAGAGGTACAACAAAAGTTGATGCAGAGTTTGCTGACCTGGTTGATGCCAGCAATGCAGCTCGAGCCATTAAGCACCCGTTCAGGAATCTACTTGCACGAAAAAATCGTCCCCAGTTGGTGATTGGGGCATTGGGAATCCCGGCATTCCAACAGCTCACTGGCATGAACTCTATCCTCTTCTATGCCCCCGTCATATTTCAGAGCTTGGGTTTTGGCTCAGGGGCATCTCTGTACTCATCTATCTTTACCAGCGGAGCGCTTGTTATTGCAGCACTTATTTCAATGCGTTGGGTCGATAAGTTTGGCAGAAGAGCTTTCTTCTTAGAAGCTGGCACCGAAATGATATGCTGCTTGGTTGCTGTGGCGATTACTCTAGCACTGAAGTTTGGACAAGGAGAAGTCCTTCCAAAAGGAATTGGAATATTCCTTGTGATTGTCCTTTGCTTATTTGTTTTGGCTTATGGAAGGTCTTGGGGTCCTCTGGGATGGCTAGTTCCAAGTGAGCTATTCCCCTTGGAAACAAGATCAGCAGGACAGAGTATTGTGGTGTGTGTCAACCTCCTCTTCACAGCTTTGATAGCACAGTGCTTCCTCGCATCGCTATGCCATCTTCGATACGGGATTTTTCTGTTGTTTGCAGGCTTGATAGTCATCATGAGTAGCTTCATTTTCTTCCTCCTGCCAGAAACAAAGCAGGTCCCGATAGAAGAAATATATCTCCTCTTTCAGAAACACTGGTATTGGAAAGGAATAGTAGGAGATGGGGAGCAAGTTGAACCCAGTGGGAAGTCAGGAGCAGTAGTTTAA

Protein Analysis

492

Amino Acids

53.51

Weight (kDa)

9.02

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 27 - 412 3e-21 Major Facilitator Superfamily
Sugar_tr PF00083 30 - 464 1.3e-107 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011228)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 482, 1357
AccB1I GGYRCC 1 cut(s) 1004
AccBSI CCGCTC 1 cut(s) 311
AciI CCGC 2 cut(s) 311, 924
AclWI GGATC 2 cut(s) 175, 295
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 1073
AfaI GTAC 4 cut(s) 209, 410, 679, 905
AfeI AGCGCT 1 cut(s) 930
AfiI CCNNNNNNNGG 1 cut(s) 480
AgsI TTSAA 3 cut(s) 228, 954, 1448
AjnI CCWGG 1 cut(s) 708
AloI GAACNNNNNNTCC 4 cut(s) 12, 44, 1149, 1181
Alw26I GTCTC 3 cut(s) 535, 599, 602
AlwI GGATC 2 cut(s) 175, 295
Ama87I CYCGRG 1 cut(s) 732
Aor51HI AGCGCT 1 cut(s) 930
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 5 cut(s) 98, 560, 728, 941, 1020
ApoI RAATTY 1 cut(s) 435
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
AseI ATTAAT 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 1 cut(s) 931
AspS9I GGNCC 3 cut(s) 313, 1148, 1369
AsuC2I CCSGG 1 cut(s) 812
AsuHPI GGTGA 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 3 cut(s) 313, 1148, 1369
BanI GGYRCC 1 cut(s) 1004
BanII GRGCYC 1 cut(s) 46
BbvI GCAGC 5 cut(s) 110, 547, 740, 953, 1007
BccI CCATC 3 cut(s) 1152, 1287, 1427
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 1 cut(s) 710
BciVI GTATCC 1 cut(s) 651
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 1 cut(s) 812
BcoDI GTCTC 3 cut(s) 535, 599, 602
BfaI CTAG 2 cut(s) 1046, 1163
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 932
BfuAI ACCTGC 2 cut(s) 482, 1357
BfuI GTATCC 1 cut(s) 651
BisI GCNGC 5 cut(s) 99, 561, 729, 942, 1021
BlsI GCNGC 5 cut(s) 100, 562, 730, 943, 1022
Bme1390I CCNGG 2 cut(s) 710, 812
Bme18I GGWCC 3 cut(s) 313, 1148, 1369
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 313, 1148, 1369
BmiI GGNNCC 4 cut(s) 426, 1006, 1149, 1371
BmrFI CCNGG 2 cut(s) 710, 812
BmrI ACTGGG 2 cut(s) 778, 1446
BmsI GCATC 5 cut(s) 285, 682, 706, 905, 1277
BmuI ACTGGG 2 cut(s) 778, 1446
BplI GAGNNNNNCTC 4 cut(s) 99, 131, 300, 332
BpmI CTGGAG 1 cut(s) 683
Bpu10I CCTNAGC 1 cut(s) 889
BpuMI CCSGG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 1322
BsaI GGTCTC 2 cut(s) 599, 602
BsaJI CCNNGG 2 cut(s) 530, 1185
BsaXI ACNNNNNCTCC 5 cut(s) 12, 42, 918, 948, 1458
Bsc4I CCNNNNNNNGG 1 cut(s) 480
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 5 cut(s) 666, 784, 835, 1412, 1452
Bse3DI GCAATG 1 cut(s) 730
Bse8I GATNNNNATC 1 cut(s) 1322
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 2 cut(s) 530, 1185
BseGI GGATG 3 cut(s) 197, 526, 1163
BseJI GATNNNNATC 1 cut(s) 1322
BseLI CCNNNNNNNGG 1 cut(s) 480
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 4 cut(s) 168, 429, 597, 903
BseNI ACTGG 5 cut(s) 666, 784, 835, 1412, 1452
BseRI GAGGAG 3 cut(s) 33, 1223, 1382
BseXI GCAGC 5 cut(s) 110, 547, 740, 953, 1007
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 1004
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 2 cut(s) 569, 812
BslFI GGGAC 3 cut(s) 369, 765, 1355
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 3 cut(s) 535, 599, 602
BsmFI GGGAC 3 cut(s) 369, 765, 1355
BsmI GAATGC 1 cut(s) 815
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 2 cut(s) 599, 602
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
Bsp19I CCATGG 1 cut(s) 530
BspACI CCGC 2 cut(s) 311, 924
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 4 cut(s) 169, 428, 598, 902
BspHI TCATGA 1 cut(s) 1326
BspLI GGNNCC 4 cut(s) 426, 1006, 1149, 1371
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 482, 1357
BspPI GGATC 2 cut(s) 175, 295
BspQI GCTCTTC 1 cut(s) 976
BspT107I GGYRCC 1 cut(s) 1004
BspTNI GGTCTC 2 cut(s) 599, 602
BsrBI CCGCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 730
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 5 cut(s) 666, 784, 835, 1412, 1452
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 530, 1185
BssMI GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
BssT1I CCWWGG 2 cut(s) 530, 1185
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 3 cut(s) 546, 620, 1257
Bst6I CTCTTC 4 cut(s) 197, 854, 976, 1241
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 6 cut(s) 217, 274, 570, 721, 1003, 1312
BstDEI CTNAG 6 cut(s) 177, 304, 415, 606, 889, 994
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 3 cut(s) 197, 526, 1163
BstH2I RGCGCY 1 cut(s) 932
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 6 cut(s) 130, 183, 290, 351, 504, 1199
BstMAI GTCTC 3 cut(s) 535, 599, 602
BstMBI GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
BstMWI GCNNNNNNNGC 5 cut(s) 569, 701, 725, 734, 1250
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 708, 810
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 5 cut(s) 110, 547, 740, 953, 1007
BstX2I RGATCY 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 180
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 530
BtgZI GCGATG 1 cut(s) 1254
BtsCI GGATG 3 cut(s) 197, 526, 1163
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 6 cut(s) 570, 828, 1049, 1262, 1405, 1459
BveI ACCTGC 2 cut(s) 482, 1357
Cac8I GCNNGC 6 cut(s) 217, 274, 570, 721, 1003, 1312
CciI TCATGA 1 cut(s) 1326
CfoI GCGC 1 cut(s) 931
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 3 cut(s) 313, 1148, 1369
CsiI ACCWGGT 1 cut(s) 708
Csp6I GTAC 4 cut(s) 208, 409, 678, 904
CviAII CATG 5 cut(s) 35, 164, 531, 835, 1327
CviQI GTAC 4 cut(s) 208, 409, 678, 904
DdeI CTNAG 6 cut(s) 177, 304, 415, 606, 889, 994
DpnI GATC 6 cut(s) 129, 182, 289, 350, 503, 1198
DpnII GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
Eam1104I CTCTTC 4 cut(s) 197, 854, 976, 1241
EarI CTCTTC 4 cut(s) 197, 854, 976, 1241
Eco130I CCWWGG 2 cut(s) 530, 1185
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 2 cut(s) 599, 602
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 313, 1148, 1369
Eco47III AGCGCT 1 cut(s) 930
Eco57I CTGAAG 1 cut(s) 1073
Eco88I CYCGRG 1 cut(s) 732
EcoO109I RGGNCCY 2 cut(s) 1148, 1369
EcoRII CCWGG 1 cut(s) 708
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 530, 1185
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 530, 1185
FaeI CATG 5 cut(s) 38, 167, 534, 838, 1330
FaqI GGGAC 3 cut(s) 369, 765, 1355
FatI CATG 5 cut(s) 34, 163, 530, 834, 1326
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 5 cut(s) 99, 561, 729, 942, 1021
FokI GGATG 3 cut(s) 184, 513, 1170
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 5 cut(s) 99, 561, 729, 942, 1021
FspBI CTAG 2 cut(s) 1046, 1163
GlaI GCGC 1 cut(s) 930
GluI GCNGC 5 cut(s) 99, 561, 729, 942, 1021
GsuI CTGGAG 1 cut(s) 683
HaeII RGCGCY 1 cut(s) 932
HaeIII GGCC 1 cut(s) 219
HapII CCGG 2 cut(s) 569, 812
HhaI GCGC 1 cut(s) 931
Hin1II CATG 5 cut(s) 38, 167, 534, 838, 1330
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 1 cut(s) 1228
HindII GTYRAC 1 cut(s) 1228
HinfI GANTC 4 cut(s) 384, 523, 757, 807
HpaII CCGG 2 cut(s) 569, 812
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 1 cut(s) 1228
Hpy188I TCNGA 7 cut(s) 107, 142, 174, 389, 418, 873, 1401
Hpy188III TCNNGA 6 cut(s) 184, 605, 754, 1327, 1372, 1464
Hpy8I GTNNAC 1 cut(s) 1228
HpyAV CCTTC 4 cut(s) 641, 648, 1085, 1131
HpyCH4III ACNGT 3 cut(s) 546, 620, 1257
HpyF10VI GCNNNNNNNGC 5 cut(s) 569, 701, 725, 734, 1250
HpyF3I CTNAG 6 cut(s) 177, 304, 415, 606, 889, 994
Hsp92II CATG 5 cut(s) 38, 167, 534, 838, 1330
HspAI GCGC 1 cut(s) 929
KroI GCCGGC 1 cut(s) 568
KroNI GCCGGC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
LguI GCTCTTC 1 cut(s) 976
LmnI GCTCC 7 cut(s) 20, 236, 308, 430, 926, 1438, 1466
Lsp1109I GCAGC 5 cut(s) 110, 547, 740, 953, 1007
LweI GCATC 5 cut(s) 285, 682, 706, 905, 1277
MabI ACCWGGT 1 cut(s) 708
MaeI CTAG 2 cut(s) 1046, 1163
MaeIII GTNAC 2 cut(s) 158, 247
MalI GATC 6 cut(s) 129, 182, 289, 350, 503, 1198
MbiI CCGCTC 1 cut(s) 311
MboI GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 6 cut(s) 63, 435, 447, 505, 573, 1086
MmeI TCCRAC 3 cut(s) 265, 518, 844
MroNI GCCGGC 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 4 cut(s) 341, 450, 741, 1477
MslI CAYNNNNRTG 4 cut(s) 341, 833, 1010, 1273
MspA1I CMGCKG 2 cut(s) 466, 924
MspI CCGG 2 cut(s) 569, 812
MspR9I CCNGG 2 cut(s) 710, 812
Mva1269I GAATGC 1 cut(s) 815
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 5 cut(s) 569, 701, 725, 734, 1250
NaeI GCCGGC 1 cut(s) 570
NciI CCSGG 1 cut(s) 812
NcoI CCATGG 1 cut(s) 530
NdeII GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
NgoMIV GCCGGC 1 cut(s) 568
NlaIII CATG 5 cut(s) 38, 167, 534, 838, 1330
NlaIV GGNNCC 4 cut(s) 426, 1006, 1149, 1371
NmuCI GTSAC 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 732
PagI TCATGA 1 cut(s) 1326
PciSI GCTCTTC 1 cut(s) 976
PcsI WCGNNNNNNNCGW 1 cut(s) 775
PctI GAATGC 1 cut(s) 815
PdiI GCCGGC 1 cut(s) 570
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 4 cut(s) 384, 523, 757, 807
PkrI GCNGC 5 cut(s) 100, 562, 730, 943, 1022
PpuMI RGGWCCY 2 cut(s) 1148, 1369
PshBI ATTAAT 1 cut(s) 341
Psp5II RGGWCCY 2 cut(s) 1148, 1369
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 4 cut(s) 426, 1006, 1149, 1371
PspPI GGNCC 3 cut(s) 313, 1148, 1369
PspPPI RGGWCCY 2 cut(s) 1148, 1369
PspXI VCTCGAGB 1 cut(s) 732
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 4 cut(s) 209, 410, 679, 905
RsaNI GTAC 4 cut(s) 208, 409, 678, 904
RseI CAYNNNNRTG 4 cut(s) 341, 833, 1010, 1273
SapI GCTCTTC 1 cut(s) 976
SaqAI TTAA 4 cut(s) 341, 450, 741, 1477
SatI GCNGC 5 cut(s) 99, 561, 729, 942, 1021
Sau3AI GATC 6 cut(s) 127, 180, 287, 348, 501, 1196
Sau96I GGNCC 3 cut(s) 313, 1148, 1369
ScrFI CCNGG 2 cut(s) 710, 812
SduI GDGCHC 1 cut(s) 46
SexAI ACCWGGT 1 cut(s) 708
SfaNI GCATC 5 cut(s) 285, 682, 706, 905, 1277
SfcI CTRYAG 1 cut(s) 561
Sfr274I CTCGAG 1 cut(s) 732
SinI GGWCC 3 cut(s) 313, 1148, 1369
SlaI CTCGAG 1 cut(s) 732
SmiMI CAYNNNNRTG 4 cut(s) 341, 833, 1010, 1273
SmlI CTYRAG 1 cut(s) 732
SmoI CTYRAG 1 cut(s) 732
Sse9I AATT 6 cut(s) 63, 435, 447, 505, 573, 1086
SsiI CCGC 2 cut(s) 311, 924
SspI AATATT 2 cut(s) 363, 1095
SspMI CTAG 2 cut(s) 1046, 1163
StyD4I CCNGG 2 cut(s) 708, 810
StyI CCWWGG 2 cut(s) 530, 1185
TaaI ACNGT 3 cut(s) 546, 620, 1257
TaqI TCGA 4 cut(s) 439, 733, 966, 1285
TasI AATT 6 cut(s) 63, 435, 447, 505, 573, 1086
TatI WGTACW 2 cut(s) 207, 903
TfiI GAWTC 4 cut(s) 384, 523, 757, 807
Tru1I TTAA 4 cut(s) 341, 450, 741, 1477
Tru9I TTAA 4 cut(s) 341, 450, 741, 1477
TscAI CASTG 6 cut(s) 570, 835, 1056, 1262, 1412, 1459
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 5 cut(s) 98, 560, 728, 941, 1020
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 4 cut(s) 67, 515, 851, 1327
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 6 cut(s) 570, 835, 1056, 1262, 1412, 1459
VpaK11BI GGWCC 3 cut(s) 313, 1148, 1369
VspI ATTAAT 1 cut(s) 341
XapI RAATTY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 2 cut(s) 791, 827
XhoI CTCGAG 1 cut(s) 732
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 2 cut(s) 1046, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.