Rroxscaffold_3G00230520

Protein of unknown function (DUF1296)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
15406541 .. 15409104
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230520.1

Sequence Viewer

Length: 153 bp
ATGGCTGTATCTGGCTATTCCAATAATCTTGCCTATCCTCACATGTCTAATGGCAACACCTATTTGCTGGTGCCTGCATGTAGTCTAAGCCTGTCCTTACTAGAAGTCCCATGGGGTTTGGAAGGTTTACTAATCCAACTGGTTATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

50

Amino Acids

5.41

Weight (kDa)

4.51

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021302)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340851
rosa_roxburghii Rroxscaffold_1G00047210 Rroxscaffold_3G00230520
rosa_samantha Rh2AG562200 Rh2CG117900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 42
BanI GGYRCC 1 cut(s) 70
BfaI CTAG 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 46, 81
BtgI CCRYGG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 75
CviAII CATG 3 cut(s) 43, 78, 111
CviJI RGCY 3 cut(s) 5, 15, 90
CviKI_1 RGCY 3 cut(s) 5, 15, 90
DdeI CTNAG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 3 cut(s) 46, 81, 114
FaiI YATR 4 cut(s) 44, 79, 112, 146
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 42, 77, 110
FspBI CTAG 1 cut(s) 101
Hin1II CATG 3 cut(s) 46, 81, 114
Hpy166II GTNNAC 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 77, 148
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 3 cut(s) 46, 81, 114
LpnPI CCDG 4 cut(s) 53, 87, 104, 125
MaeI CTAG 1 cut(s) 101
MnlI CCTC 1 cut(s) 48
NcoI CCATGG 1 cut(s) 110
NlaIII CATG 3 cut(s) 46, 81, 114
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 2 cut(s) 46, 81
PciI ACATGT 1 cut(s) 42
PscI ACATGT 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 72
SetI ASST 2 cut(s) 62, 127
SgeI CNNG 9 cut(s) 24, 41, 55, 80, 86, 90, 103, 113, 123
SspMI CTAG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 110
XceI RCATGY 2 cut(s) 46, 81
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.