Rh2CG117900

Protein of unknown function (DUF1296)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0021302
Physical Location & Seq
Forward (+)
10365902 .. 10369873
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG117900.1

Sequence Viewer

Length: 504 bp
ATGGTTGTATCTGTCTATTCCAATAATCTTGCCTATCCTCACATGTCTAATGACAACACCTACTTGTTGGTGCCTGCATGTAGTTTAAGCCTGTCCTTACTGGAAGTCCCATGGGGTTTGGAAGGATATCATCTTGTCCTTGATTCATCATCACTCTATTTGAACTTTTTAAGGGGTTATAATCTGAAACAAAAGCTGCAAGAGCTTATGAACGAGGAGACAAAAAAAAAAGTTGTCCACTCAATGAGACCAGAGACGATGATGGGTAATACCTTAGGGGTGATGAGGTGGCAGCCTCTTCTCTGGGGAGGCAGAGTTATGGTCTTCTGGGCCCACTTGGGACCGAAAGCTGCCATTGAATTGGGGTCGGTGGTGCTTGGGGCGGTGAACAATGAACAGTTGATGCGAACCGGAGATGAGACTGAGAGGGGCTTCGCCACAGAGAGGAACGACAGTGAGCTTTGCATCTTTGGGATTTCGGGATATGAGACCCAGAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1296

Protein Analysis

167

Amino Acids

18.84

Weight (kDa)

5.79

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021302)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0340851
rosa_roxburghii Rroxscaffold_1G00047210 Rroxscaffold_3G00230520
rosa_samantha Rh2AG562200 Rh2CG117900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 70
AciI CCGC 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 444
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 163, 359
AluBI AGCT 4 cut(s) 196, 205, 350, 460
AluI AGCT 4 cut(s) 196, 205, 350, 460
Alw26I GTCTC 5 cut(s) 212, 241, 248, 413, 482
AoxI GGCC 1 cut(s) 330
ApaI GGGCCC 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 196, 292, 350
AspS9I GGNCC 3 cut(s) 330, 331, 341
AsuHPI GGTGA 2 cut(s) 292, 397
AvaII GGWCC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 183, 304, 337
BccI CCATC 1 cut(s) 256
BcoDI GTCTC 5 cut(s) 212, 241, 248, 413, 482
BisI GCNGC 3 cut(s) 197, 293, 351
BlsI GCNGC 3 cut(s) 198, 294, 352
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 330, 331, 341
BmiI GGNNCC 3 cut(s) 72, 332, 342
BmsI GCATC 2 cut(s) 393, 474
BpiI GAAGAC 1 cut(s) 316
BsaI GGTCTC 2 cut(s) 241, 482
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 105
Bse21I CCTNAGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 3 cut(s) 183, 304, 337
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 92, 354
BslI CCNNNNNNNGG 1 cut(s) 444
BsmAI GTCTC 5 cut(s) 212, 241, 248, 413, 482
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 92, 354
BsnI GGCC 1 cut(s) 332
Bso31I GGTCTC 2 cut(s) 241, 482
Bsp120I GGGCCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 1 cut(s) 383
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 3 cut(s) 72, 332, 342
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 2 cut(s) 241, 482
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 399, 455
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 274, 423
BstDSI CCRYGG 1 cut(s) 110
BstMAI GTCTC 5 cut(s) 212, 241, 248, 413, 482
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 46, 81
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 183, 304, 337
BstV2I GAAGAC 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 274
BsuRI GGCC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 330, 331, 341
CviAII CATG 3 cut(s) 43, 78, 111
CviJI RGCY 8 cut(s) 90, 196, 205, 295, 332, 350, 432, 460
CviKI_1 RGCY 8 cut(s) 90, 196, 205, 295, 332, 350, 432, 460
DdeI CTNAG 2 cut(s) 274, 423
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 2 cut(s) 241, 482
Eco32I GATATC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 3 cut(s) 46, 81, 114
FaiI YATR 7 cut(s) 44, 79, 112, 180, 209, 320, 486
FaqI GGGAC 2 cut(s) 92, 354
FatI CATG 3 cut(s) 42, 77, 110
Fnu4HI GCNGC 3 cut(s) 197, 293, 351
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 197, 293, 351
GluI GCNGC 3 cut(s) 197, 293, 351
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 411
Hin1II CATG 3 cut(s) 46, 81, 114
HinfI GANTC 2 cut(s) 143, 498
HpaII CCGG 1 cut(s) 411
HphI GGTGA 2 cut(s) 292, 397
Hpy166II GTNNAC 2 cut(s) 238, 388
Hpy188I TCNGA 2 cut(s) 186, 503
Hpy188III TCNNGA 1 cut(s) 480
Hpy8I GTNNAC 2 cut(s) 238, 388
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 399, 455
HpyCH4V TGCA 3 cut(s) 77, 199, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 274, 423
Hsp92II CATG 3 cut(s) 46, 81, 114
LpnPI CCDG 7 cut(s) 86, 87, 104, 264, 289, 313, 424
Lsp1109I GCAGC 3 cut(s) 183, 304, 337
LweI GCATC 2 cut(s) 393, 474
MboII GAAGA 2 cut(s) 290, 316
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 1 cut(s) 359
MnlI CCTC 7 cut(s) 48, 208, 279, 302, 306, 420, 438
MseI TTAA 2 cut(s) 86, 170
MspI CCGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 202
NcoI CCATGG 1 cut(s) 110
NlaIII CATG 3 cut(s) 46, 81, 114
NlaIV GGNNCC 3 cut(s) 72, 332, 342
NspI RCATGY 2 cut(s) 46, 81
PciI ACATGT 1 cut(s) 42
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 198, 294, 352
PscI ACATGT 1 cut(s) 42
PsiI TTATAA 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 72, 332, 342
PspOMI GGGCCC 1 cut(s) 330
PspPI GGNCC 3 cut(s) 330, 331, 341
SaqAI TTAA 2 cut(s) 86, 170
SatI GCNGC 3 cut(s) 197, 293, 351
Sau96I GGNCC 3 cut(s) 330, 331, 341
SduI GDGCHC 1 cut(s) 334
SetI ASST 7 cut(s) 62, 198, 207, 275, 290, 352, 462
SfaNI GCATC 2 cut(s) 393, 474
SinI GGWCC 1 cut(s) 341
Sse9I AATT 1 cut(s) 359
SsiI CCGC 1 cut(s) 383
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 399, 455
TaqII GACCGA 1 cut(s) 358
TasI AATT 1 cut(s) 359
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 86, 170
Tru9I TTAA 2 cut(s) 86, 170
TscAI CASTG 1 cut(s) 460
TseI GCWGC 3 cut(s) 196, 292, 350
TspDTI ATGAA 3 cut(s) 135, 224, 408
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 341
XceI RCATGY 2 cut(s) 46, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.