Rroxscaffold_3G00247960

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0025801
Physical Location & Seq
Forward (+)
41286680 .. 41298004
11325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247960.1

Sequence Viewer

Length: 837 bp
ATGACAGTGATGATGCGGCTTGGCATGCGGCGGGGAGCGGCGATTCGCCACTTCGGAGGAGAAACGAAACCGGACGAGCTTGTCACTAAGCTGATCCATCGGCGGCTTCGGGATCGACCGATCCTTGTGCTTCTCGAGTTCGTTCCATCCGTCACCATCTCTCGGTTCTCACTCCCATCTCTCACGCTCTCCGTCTCTCGAGCTCCGGCTCGGTTGCAGTTCGATCAGCTCCACGGTCCACGCTCCACGGCTTCGGTTCGCTCCACGGTTCGGCTCCACGGTTCGGCTTCGGTTCGGCTCCACGGTTCCGGCTCCACGGTTCGACGATCGAAGCATATCGAATGGACTGCTCCAACTGCAATGTTCCAAACTCTTCAAAGTTTATCCATTAAATACTGCAGCTTGCGGGGAAGTCTCTTCACTTACGATGTTGCTCGGGAGCGGCGATTCCGCCACTTCGCAGGAGAAACGAAACCGACGAGCTTGTCACTAAGTCGATCCATCGGCAGGCTTCGGGATCGACCGATCCTTGTGCTTCTCGAGTTCGTTCCATCCGTCACCATCTCTCGGTTCTCACTCCCATCTCTCACGCTCTCCGTCTCTCGAGCTCCCGGCTCGGTTGCGGTTCGATCAGCTCCACGTTCGGCTCCACGCTCCGGCTTCGGTTCGGCTCCACAGTTCGGCTCCACGGTTCCGGCTTCGGTTCAGCTCCACGGTTCCGGCTCCACGCTCACCATTGCCGCCTCGCTGCAATGGACACTACCACGCCGCCTTGATGCCAACACTCCAAAGACATCAACGAAAACTGGTGAAAGCCCAAACCCAAAACTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

278

Amino Acids

30.46

Weight (kDa)

11.93

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025801)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00247960 Rroxscaffold_5G00349350
rosa_samantha Rh4CG014500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 80, 484
AccBSI CCGCTC 2 cut(s) 38, 442
AclWI GGATC 6 cut(s) 88, 115, 120, 492, 520, 525
AfiI CCNNNNNNNGG 7 cut(s) 162, 270, 283, 507, 567, 656, 680
AgsI TTSAA 1 cut(s) 377
AluBI AGCT 9 cut(s) 79, 91, 203, 229, 402, 483, 608, 635, 709
AluI AGCT 9 cut(s) 79, 91, 203, 229, 402, 483, 608, 635, 709
Alw21I GWGCWC 2 cut(s) 205, 610
Alw26I GTCTC 3 cut(s) 199, 419, 604
AlwI GGATC 6 cut(s) 88, 115, 120, 492, 520, 525
Ama87I CYCGRG 5 cut(s) 134, 198, 435, 539, 603
ApeKI GCWGC 2 cut(s) 399, 748
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 145, 550, 724, 821
AvaI CYCGRG 5 cut(s) 134, 198, 435, 539, 603
AvaII GGWCC 1 cut(s) 236
BanII GRGCYC 2 cut(s) 205, 610
Bbv12I GWGCWC 2 cut(s) 205, 610
BbvI GCAGC 2 cut(s) 411, 735
BccI CCATC 8 cut(s) 105, 154, 164, 184, 509, 559, 569, 589
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 6 cut(s) 109, 143, 329, 363, 514, 548
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 3 cut(s) 199, 419, 604
BfmI CTRYAG 1 cut(s) 397
BisI GCNGC 9 cut(s) 17, 29, 39, 104, 400, 443, 741, 749, 769
BlsI GCNGC 9 cut(s) 18, 30, 40, 105, 401, 444, 742, 750, 770
Bme1390I CCNGG 1 cut(s) 612
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 5 cut(s) 134, 198, 435, 539, 603
BmgT120I GGNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 612
BmsI GCATC 2 cut(s) 3, 766
BpuMI CCSGG 1 cut(s) 612
BsaJI CCNNGG 8 cut(s) 232, 246, 264, 277, 301, 315, 687, 712
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 7 cut(s) 162, 270, 283, 507, 567, 656, 680
Bse1I ACTGG 1 cut(s) 811
Bse3DI GCAATG 3 cut(s) 366, 735, 758
BseDI CCNNGG 8 cut(s) 232, 246, 264, 277, 301, 315, 687, 712
BseGI GGATG 2 cut(s) 146, 551
BseLI CCNNNNNNNGG 7 cut(s) 162, 270, 283, 507, 567, 656, 680
BseMI GCAATG 3 cut(s) 366, 735, 758
BseNI ACTGG 1 cut(s) 811
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 411, 735
Bsh1285I CGRYCG 3 cut(s) 119, 329, 524
BsiEI CGRYCG 3 cut(s) 119, 329, 524
BsiHKAI GWGCWC 2 cut(s) 205, 610
BsiHKCI CYCGRG 5 cut(s) 134, 198, 435, 539, 603
BsiSI CCGG 7 cut(s) 71, 206, 309, 612, 657, 695, 720
BslI CCNNNNNNNGG 7 cut(s) 162, 270, 283, 507, 567, 656, 680
BsmAI GTCTC 3 cut(s) 199, 419, 604
BsmBI CGTCTC 2 cut(s) 199, 604
BsoBI CYCGRG 5 cut(s) 134, 198, 435, 539, 603
Bsp1286I GDGCHC 2 cut(s) 205, 610
Bsp143I GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
BspMAI CTGCAG 1 cut(s) 401
BspPI GGATC 6 cut(s) 88, 115, 120, 492, 520, 525
BsrBI CCGCTC 2 cut(s) 38, 442
BsrDI GCAATG 3 cut(s) 366, 735, 758
BsrI ACTGG 1 cut(s) 811
BssECI CCNNGG 8 cut(s) 232, 246, 264, 277, 301, 315, 687, 712
BssMI GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
Bst4CI ACNGT 9 cut(s) 7, 236, 268, 281, 305, 319, 678, 691, 716
Bst6I CTCTTC 2 cut(s) 378, 422
BstC8I GCNNGC 3 cut(s) 26, 404, 509
BstDEI CTNAG 2 cut(s) 87, 491
BstDSI CCRYGG 8 cut(s) 232, 246, 264, 277, 301, 315, 687, 712
BstF5I GGATG 2 cut(s) 146, 551
BstKTI GATC 9 cut(s) 96, 115, 123, 226, 329, 500, 520, 528, 632
BstMAI GTCTC 3 cut(s) 199, 419, 604
BstMBI GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
BstMCI CGRYCG 3 cut(s) 119, 329, 524
BstMWI GCNNNNNNNGC 2 cut(s) 25, 356
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 411, 735
BtgI CCRYGG 8 cut(s) 232, 246, 264, 277, 301, 315, 687, 712
BtsCI GGATG 2 cut(s) 146, 551
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 26, 404, 509
Cfr13I GGNCC 1 cut(s) 236
CviAII CATG 1 cut(s) 25
DdeI CTNAG 2 cut(s) 87, 491
DpnI GATC 9 cut(s) 95, 114, 122, 225, 328, 499, 519, 527, 631
DpnII GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
DrdI GACNNNNNNGTC 2 cut(s) 80, 484
DseDI GACNNNNNNGTC 2 cut(s) 80, 484
Eam1104I CTCTTC 2 cut(s) 378, 422
EarI CTCTTC 2 cut(s) 378, 422
EciI GGCGGA 1 cut(s) 440
Ecl136II GAGCTC 2 cut(s) 203, 608
Eco24I GRGCYC 2 cut(s) 205, 610
Eco47I GGWCC 1 cut(s) 236
Eco53kI GAGCTC 2 cut(s) 203, 608
Eco88I CYCGRG 5 cut(s) 134, 198, 435, 539, 603
EcoICRI GAGCTC 2 cut(s) 203, 608
EcoT38I GRGCYC 2 cut(s) 205, 610
Esp3I CGTCTC 2 cut(s) 199, 604
FaeI CATG 1 cut(s) 28
FaiI YATR 2 cut(s) 26, 336
FatI CATG 1 cut(s) 24
FauI CCCGC 2 cut(s) 24, 399
Fnu4HI GCNGC 9 cut(s) 17, 29, 39, 104, 400, 443, 741, 749, 769
FokI GGATG 2 cut(s) 133, 538
FriOI GRGCYC 2 cut(s) 205, 610
Fsp4HI GCNGC 9 cut(s) 17, 29, 39, 104, 400, 443, 741, 749, 769
GluI GCNGC 9 cut(s) 17, 29, 39, 104, 400, 443, 741, 749, 769
HapII CCGG 7 cut(s) 71, 206, 309, 612, 657, 695, 720
Hin1II CATG 1 cut(s) 28
HinfI GANTC 2 cut(s) 43, 447
HpaII CCGG 7 cut(s) 71, 206, 309, 612, 657, 695, 720
HphI GGTGA 4 cut(s) 145, 550, 724, 821
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 7 cut(s) 110, 134, 198, 437, 515, 539, 603
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 2 cut(s) 327, 481
HpyCH4III ACNGT 9 cut(s) 7, 236, 268, 281, 305, 319, 678, 691, 716
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 4 cut(s) 217, 359, 399, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 356
HpyF3I CTNAG 2 cut(s) 87, 491
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
Lsp1109I GCAGC 2 cut(s) 411, 735
LweI GCATC 2 cut(s) 3, 766
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 4 cut(s) 82, 151, 486, 556
MalI GATC 9 cut(s) 95, 114, 122, 225, 328, 499, 519, 527, 631
MbiI CCGCTC 2 cut(s) 38, 442
MboI GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
MboII GAAGA 2 cut(s) 365, 409
MhlI GDGCHC 2 cut(s) 205, 610
MluCI AATT 1 cut(s) 832
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 2 cut(s) 50, 754
MseI TTAA 1 cut(s) 390
MspI CCGG 7 cut(s) 71, 206, 309, 612, 657, 695, 720
MspR9I CCNGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 25, 356
NciI CCSGG 1 cut(s) 612
NdeII GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 4 cut(s) 82, 151, 486, 556
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PaeR7I CTCGAG 4 cut(s) 134, 198, 539, 603
PcsI WCGNNNNNNNCGW 4 cut(s) 147, 442, 476, 552
PfeI GAWTC 2 cut(s) 43, 447
PkrI GCNGC 9 cut(s) 18, 30, 40, 105, 401, 444, 742, 750, 770
Ple19I CGATCG 1 cut(s) 329
Psp124BI GAGCTC 2 cut(s) 205, 610
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 401
PvuI CGATCG 1 cut(s) 329
SacI GAGCTC 2 cut(s) 205, 610
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 9 cut(s) 17, 29, 39, 104, 400, 443, 741, 749, 769
Sau3AI GATC 9 cut(s) 93, 112, 120, 223, 326, 497, 517, 525, 629
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 2 cut(s) 205, 610
SfaNI GCATC 2 cut(s) 3, 766
SfcI CTRYAG 1 cut(s) 397
Sfr274I CTCGAG 4 cut(s) 134, 198, 539, 603
SinI GGWCC 1 cut(s) 236
SlaI CTCGAG 4 cut(s) 134, 198, 539, 603
SmlI CTYRAG 4 cut(s) 134, 198, 539, 603
SmoI CTYRAG 4 cut(s) 134, 198, 539, 603
SphI GCATGC 1 cut(s) 28
Sse9I AATT 1 cut(s) 832
SstI GAGCTC 2 cut(s) 205, 610
StyD4I CCNGG 1 cut(s) 610
TaaI ACNGT 9 cut(s) 7, 236, 268, 281, 305, 319, 678, 691, 716
TaiI ACGT 1 cut(s) 643
TaqII GACCGA 2 cut(s) 133, 538
TasI AATT 1 cut(s) 832
TauI GCSGC 7 cut(s) 19, 31, 41, 106, 445, 743, 771
TfiI GAWTC 2 cut(s) 43, 447
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 4 cut(s) 82, 151, 486, 556
TseI GCWGC 2 cut(s) 399, 748
Tsp45I GTSAC 4 cut(s) 82, 151, 486, 556
TspGWI ACGGA 4 cut(s) 139, 181, 544, 586
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 236
XceI RCATGY 1 cut(s) 28
XhoI CTCGAG 4 cut(s) 134, 198, 539, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.