Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0025801

Physical Location & Seq

Genomic Coordinates Forward (+)

22258487 .. 22265826

Gene Structure 7340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTCCAAACTCTTCAAAGTTTATCCATTAAATACTGCAGCTTGCAGGGAAGTCTCTTCACTTACGATGTTGCTCGAGAGAAGTCATCGGAGACTTCACTGGACTTCAATCAACGGCTGCCGGAGTATGATGGCCAATCGCCGAATCAGTTAGTTGAGGATGCGCAGCCGGAGAAGCCGGGGGTTGTGGTGGTCGAGGAAGGGAGGGTGTTTGAGGTCCGTGGAGGACATGTTGAGGCTACTACATTTCATGAAGGTCGATACTCGCCGCCGGTTGCAATCACGGCCGCATATGGTTCATATGCACTCGAGCCACCAGGTCATCGGGAAATGCATGACCATCACCGGAAAATGGAGACTCACGAGTTGCTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

5.43

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025801)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00247960 Rroxscaffold_5G00349350
rosa_samantha	Rh4CG014500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AciI	CCGC	2 cut(s)	269, 288
AcoI	YGGCCR	2 cut(s)	133, 285
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	17, 109
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	59, 86, 350
Ama87I	CYCGRG	2 cut(s)	75, 308
AoxI	GGCC	2 cut(s)	133, 285
ApeKI	GCWGC	3 cut(s)	39, 118, 166
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	2 cut(s)	75, 308
AvaII	GGWCC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	135
BauI	CACGAG	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	51, 105, 178
BccI	CCATC	2 cut(s)	125, 348
BceAI	ACGGC	2 cut(s)	131, 300
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	3 cut(s)	59, 86, 350
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	5 cut(s)	40, 119, 167, 269, 288
BlsI	GCNGC	5 cut(s)	41, 120, 168, 270, 289
Bme1390I	CCNGG	2 cut(s)	180, 318
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	2 cut(s)	75, 308
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	180, 318
BmsI	GCATC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	179, 220
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	179, 220
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	105
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	51, 105, 178
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	135, 287
BsiEI	CGRYCG	1 cut(s)	288
BsiHKCI	CYCGRG	2 cut(s)	75, 308
BsiSI	CCGG	5 cut(s)	122, 170, 179, 272, 346
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	3 cut(s)	59, 86, 350
BsnI	GGCC	2 cut(s)	135, 287
BsoBI	CYCGRG	2 cut(s)	75, 308
BspACI	CCGC	2 cut(s)	269, 288
BspANI	GGCC	2 cut(s)	135, 287
BspHI	TCATGA	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	179, 220
BssSI	CACGAG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	318
Bst6I	CTCTTC	2 cut(s)	18, 62
BstC8I	GCNNGC	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	166
BstMAI	GTCTC	3 cut(s)	59, 86, 350
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 284
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	178, 316
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	51, 105, 178
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	135, 287
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	217
CsiI	ACCWGGT	1 cut(s)	316
CviAII	CATG	3 cut(s)	230, 251, 335
CviJI	RGCY	8 cut(s)	42, 118, 135, 169, 178, 239, 287, 313
CviKI_1	RGCY	8 cut(s)	42, 118, 135, 169, 178, 239, 287, 313
EaeI	YGGCCR	2 cut(s)	133, 285
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	18, 62
EarI	CTCTTC	2 cut(s)	18, 62
EclXI	CGGCCG	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	285
Eco88I	CYCGRG	2 cut(s)	75, 308
EcoRII	CCWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	336
FaeI	CATG	3 cut(s)	233, 254, 338
FaiI	YATR	8 cut(s)	129, 231, 252, 292, 294, 301, 303, 336
FatI	CATG	3 cut(s)	229, 250, 334
FauNDI	CATATG	2 cut(s)	292, 301
Fnu4HI	GCNGC	5 cut(s)	40, 119, 167, 269, 288
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	40, 119, 167, 269, 288
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	5 cut(s)	40, 119, 167, 269, 288
HaeIII	GGCC	2 cut(s)	135, 287
HapII	CCGG	5 cut(s)	122, 170, 179, 272, 346
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	233, 254, 338
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	2 cut(s)	145, 358
HpaII	CCGG	5 cut(s)	122, 170, 179, 272, 346
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	91, 374
Hpy188III	TCNNGA	4 cut(s)	77, 251, 326, 362
HpyAV	CCTTC	2 cut(s)	194, 248
HpyCH4V	TGCA	5 cut(s)	39, 46, 278, 305, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 284
Hsp92II	CATG	3 cut(s)	233, 254, 338
HspAI	GCGC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	9 cut(s)	32, 86, 135, 183, 192, 285, 303, 330, 359
Lsp1109I	GCAGC	3 cut(s)	51, 105, 178
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	316
MboII	GAAGA	2 cut(s)	5, 49
MlsI	TGGCCA	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	6 cut(s)	151, 190, 198, 208, 218, 229
Mox20I	TGGCCA	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	5 cut(s)	122, 170, 179, 272, 346
MspR9I	CCNGG	2 cut(s)	180, 318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	175, 284
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	2 cut(s)	292, 301
NlaIII	CATG	3 cut(s)	233, 254, 338
NsbI	TGCGCA	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	336
NspI	RCATGY	1 cut(s)	233
PaeR7I	CTCGAG	2 cut(s)	75, 308
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	41, 120, 168, 270, 289
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	40, 119, 167, 269, 288
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	180, 318
SetI	ASST	4 cut(s)	44, 219, 259, 322
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	37
Sfr274I	CTCGAG	2 cut(s)	75, 308
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	2 cut(s)	75, 308
SmlI	CTYRAG	2 cut(s)	75, 308
SmoI	CTYRAG	2 cut(s)	75, 308
SsiI	CCGC	2 cut(s)	269, 288
StyD4I	CCNGG	2 cut(s)	178, 316
TaqI	TCGA	4 cut(s)	76, 195, 259, 309
TauI	GCSGC	2 cut(s)	271, 290
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	3 cut(s)	39, 118, 166
TspDTI	ATGAA	3 cut(s)	239, 267, 288
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	1 cut(s)	233
XhoI	CTCGAG	2 cut(s)	75, 308
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.