Rroxscaffold_3G00250100

TENA/THI-4/PQQC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0022787
Physical Location & Seq
Reverse (-)
43887796 .. 43888235
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250100.1

Sequence Viewer

Length: 270 bp
ATGGTGGACAAAGCAGGCCTTGCGCGGTGGCTCTGGATCAAGTTCAAGGATGATTCCGTCTTTGCTCTCTGCACTCCCTTCTTCGTCGGCCTCGCCTCCGCCAGTCTCGACTCTCACACATTCCTCCATGGTGAAATATGGTTGGAGAGAATGGCTGGGTCAAATATGGCGTGCAACTATGGAGGATGCAGTGACTACGAATTGTCGAGGGATTGCGCCGATGATGATGACAAAGTCGGCATACGTGCTTTGAGGAAGCTCGTAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TENA_THI-4

Protein Analysis

89

Amino Acids

9.92

Weight (kDa)

5.15

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022787)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0254991 RchiOBHm_Chr7g0224921
rosa_roxburghii Rroxscaffold_3G00250100
rosa_samantha Rh4CG415900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AciI CCGC 2 cut(s) 25, 99
AclWI GGATC 1 cut(s) 44
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 44
AoxI GGCC 2 cut(s) 16, 88
AspLEI GCGC 2 cut(s) 25, 218
AsuHPI GGTGA 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 268
BmsI GCATC 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 55, 191
BseNI ACTGG 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 18, 90
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 18, 90
Bsp143I GATC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 2 cut(s) 25, 99
BspANI GGCC 2 cut(s) 18, 90
BspFNI CGCG 1 cut(s) 25
BspPI GGATC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 16, 172
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 55, 191
BstFNI CGCG 1 cut(s) 25
BstHHI GCGC 2 cut(s) 25, 218
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstUI CGCG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 18, 90
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 55, 191
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 16, 172
CfoI GCGC 2 cut(s) 25, 218
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 18, 31, 90, 155, 259
CviKI_1 RGCY 5 cut(s) 18, 31, 90, 155, 259
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 1 cut(s) 131
FaiI YATR 5 cut(s) 129, 139, 167, 180, 242
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 1 cut(s) 127
FokI GGATG 2 cut(s) 62, 198
FspBI CTAG 1 cut(s) 268
GlaI GCGC 2 cut(s) 24, 217
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 18, 90
HhaI GCGC 2 cut(s) 25, 218
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 2 cut(s) 23, 216
HinP1I GCGC 2 cut(s) 23, 216
HinfI GANTC 2 cut(s) 53, 110
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 34, 107
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 72, 174, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 2 cut(s) 23, 216
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 3 cut(s) 19, 115, 141
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 268
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 73
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 6 cut(s) 101, 106, 134, 176, 201, 246
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 20
NcoI CCATGG 1 cut(s) 127
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 191
PceI AGGCCT 1 cut(s) 18
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 233
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 104
SetI ASST 2 cut(s) 247, 261
SfaNI GCATC 1 cut(s) 176
Sse9I AATT 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 2 cut(s) 25, 99
SspMI CTAG 1 cut(s) 268
StuI AGGCCT 1 cut(s) 18
StyI CCWWGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 108, 206
TasI AATT 1 cut(s) 200
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 233
XspI CTAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.