Rh4CG415900

TENA/THI-4/PQQC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0022787
Physical Location & Seq
Reverse (-)
66045313 .. 66048155
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG415900.1

Sequence Viewer

Length: 396 bp
ATGACTTCTCACCGTTCTCTCACTTCGTCGAGCTCACTTCGTCTTCACCGTTCTGGCGCCAAAACCACATCTATTTCCCGCTCAAGTTCTCAAGGACCAGTCTCTCTCTGCATCTTCGATTTCCTGCATCGTCGGCTCTGGATCAAGTTCAAAGACGACTCCGTCTTCGCTCTCTACACTCCCTTCTTCGTCGGCCTCGCCTCCGCCACTCTCGACTCTCACACCTTCCGCCATTTCGTCGCTCAGGACCTCCATTTCCTCAAAGCCTTTGCTCAAGCGTACGAATTGGCGGAGGATTGCGCCGACGACGACGACGACAAGGCCGGCATACGCGCTTTGAGGAAGCGCGTTCTCCAGAGGCTTCAATTGCACGATAAACAGGGGTTTGCACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TENA_THI-4

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

9.56

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022787)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0254991 RchiOBHm_Chr7g0224921
rosa_roxburghii Rroxscaffold_3G00250100
rosa_samantha Rh4CG415900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 2 cut(s) 333, 348
AciI CCGC 4 cut(s) 79, 204, 229, 290
AclWI GGATC 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 151, 365
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 149
AoxI GGCC 2 cut(s) 193, 321
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 4 cut(s) 59, 302, 335, 348
AspS9I GGNCC 2 cut(s) 95, 247
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 2 cut(s) 95, 247
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 35, 157
Bbv12I GWGCWC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 95, 247
BmgT120I GGNCC 2 cut(s) 95, 247
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 2 cut(s) 120, 136
BpiI GAAGAC 2 cut(s) 35, 157
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 3 cut(s) 67, 75, 258
BsaHI GRCGYC 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 98
Bsh1236I CGCG 2 cut(s) 333, 348
BshFI GGCC 2 cut(s) 195, 323
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 324
BsiWI CGTACG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 195, 323
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 4 cut(s) 79, 204, 229, 290
BspANI GGCC 2 cut(s) 195, 323
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 2 cut(s) 333, 348
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 323
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 14, 50
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 243
BstFNI CGCG 2 cut(s) 333, 348
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 4 cut(s) 59, 302, 335, 348
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 133, 367
BstUI CGCG 2 cut(s) 333, 348
BstV2I GAAGAC 2 cut(s) 35, 157
BsuRI GGCC 2 cut(s) 195, 323
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 4 cut(s) 59, 302, 335, 348
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 95, 247
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 6 cut(s) 33, 136, 195, 266, 323, 361
CviKI_1 RGCY 6 cut(s) 33, 136, 195, 266, 323, 361
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 243
DinI GGCGCC 1 cut(s) 58
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EciI GGCGGA 3 cut(s) 193, 218, 305
Ecl136II GAGCTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 95, 247
Eco53kI GAGCTC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaiI YATR 1 cut(s) 329
FauI CCCGC 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 35
GlaI GCGC 4 cut(s) 58, 301, 334, 347
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 195, 323
HapII CCGG 1 cut(s) 324
HhaI GCGC 4 cut(s) 59, 302, 335, 348
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 4 cut(s) 57, 300, 333, 346
HinP1I GCGC 4 cut(s) 57, 300, 333, 346
HinfI GANTC 2 cut(s) 158, 215
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 38
Hpy188III TCNNGA 4 cut(s) 139, 212, 245, 355
Hpy99I CGWCG 8 cut(s) 31, 135, 194, 242, 308, 311, 314, 317
HpyAV CCTTC 2 cut(s) 193, 235
HpyCH4III ACNGT 2 cut(s) 14, 50
HpyCH4V TGCA 4 cut(s) 111, 127, 370, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 367
HpyF3I CTNAG 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 4 cut(s) 57, 300, 333, 346
KasI GGCGCC 1 cut(s) 56
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 8 cut(s) 39, 111, 124, 137, 230, 337, 365, 368
LweI GCATC 2 cut(s) 120, 136
MalI GATC 1 cut(s) 143
MbiI CCGCTC 1 cut(s) 81
MboI GATC 1 cut(s) 141
MboII GAAGA 4 cut(s) 35, 106, 157, 178
MfeI CAATTG 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 284, 365
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 152, 209
MnlI CCTC 7 cut(s) 206, 211, 260, 269, 286, 333, 351
MroNI GCCGGC 1 cut(s) 323
MspI CCGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 365
MvnI CGCG 2 cut(s) 333, 348
MwoI GCNNNNNNNGC 2 cut(s) 133, 367
NaeI GCCGGC 1 cut(s) 325
NarI GGCGCC 1 cut(s) 57
NdeII GATC 1 cut(s) 141
NgoMIV GCCGGC 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 312
PdiI GCCGGC 1 cut(s) 325
Pfl23II CGTACG 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 161
PleI GAGTC 2 cut(s) 152, 209
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 152, 209
PpuMI RGGWCCY 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 247
PspLI CGTACG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 95, 247
PspPPI RGGWCCY 1 cut(s) 247
PsyI GACNNNGTC 1 cut(s) 161
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SacI GAGCTC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 95, 247
SchI GAGTC 2 cut(s) 152, 209
SduI GDGCHC 1 cut(s) 35
SetI ASST 3 cut(s) 35, 227, 252
SfaNI GCATC 2 cut(s) 120, 136
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 2 cut(s) 95, 247
SmlI CTYRAG 3 cut(s) 82, 90, 273
SmoI CTYRAG 3 cut(s) 82, 90, 273
Sse9I AATT 2 cut(s) 284, 365
SsiI CCGC 4 cut(s) 79, 204, 229, 290
SspDI GGCGCC 1 cut(s) 56
SstI GAGCTC 1 cut(s) 35
TaaI ACNGT 2 cut(s) 14, 50
TaqI TCGA 3 cut(s) 29, 117, 213
TasI AATT 2 cut(s) 284, 365
TspGWI ACGGA 1 cut(s) 151
Tth111I GACNNNGTC 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 95, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.