Rroxscaffold_3G00255290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016715
Physical Location & Seq
Forward (+)
49514421 .. 49516509
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255290.1

Sequence Viewer

Length: 504 bp
ATGGCTCCCTCGTCTTCTTCCCCTTCCTCCAAATCCTCACCTCCCCCAACAACAACCCACTTCACTCCCATTCAAGAAGAAGATGGAAATGAGAGTACTAGTACTACCACCCCTAACAAAGCTACTCCCAAGCACCACAACTCTACACCTCTCCACTATTCTCACAAGCACGGCAAGCGTCACGGTAAGAAGCGCTCGGAGATATCAGCCGGTTCGTCGTCGGCCACTCGCGAGGAAGAAGACGACGACGACATGTCGGTGAACTGCAACAAGTGTCGTCCAAACGCTCGAGAAAAGATCTCGGTGGTGCCCTTGGACAACAACAACGGCTTCAATCGCAAGAACGGCTCGTCGTCGTCCGTGTTCATGGCCAGCCCAAACGGCTTTCTGAAGTCGATTCTCTCGTCGTTCACCCGGAAGAGTCCGAAATTACCGATGGACCCTTACGCGGCGGCGAGGAGGAGAAGTGGAAGGTTGCGGTGGCGGAGCTCTCGCAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.38

Weight (kDa)

10.28

Isoelectric Point (pI)

94.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12330
fragaria_vesca FvH4_5g00760
malus_domestica MD04G1079100.v1.1
prunus_persica Prupe.5G080100_v2.0.a1
pyrus_communis pycom04g07090
rosa_chinensis RchiOBHm_Chr7g0201471
rosa_laevigata RLG00000003675
rosa_roxburghii Rroxscaffold_3G00255290
rosa_rugosa Rorug07G0063700
rosa_samantha Rh7AG190600 Rh7BG192800 Rh7CG201900 Rh7DG195400
rosa_wichuraiana Rw7G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccII CGCG 2 cut(s) 231, 449
AciI CCGC 4 cut(s) 449, 452, 478, 484
AcoI YGGCCR 2 cut(s) 222, 369
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 2 cut(s) 97, 103
AfeI AGCGCT 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 74, 334
AhdI GACNNNNNGTC 1 cut(s) 253
AhlI ACTAGT 1 cut(s) 98
AluBI AGCT 3 cut(s) 122, 489, 501
AluI AGCT 3 cut(s) 122, 489, 501
Alw21I GWGCWC 1 cut(s) 491
AlwNI CAGNNNCTG 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 288
Aor51HI AGCGCT 1 cut(s) 194
AoxI GGCC 2 cut(s) 222, 369
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 3 cut(s) 30, 271, 403
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 312
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 6, 246
Bbv12I GWGCWC 1 cut(s) 491
BccI CCATC 2 cut(s) 77, 430
BceAI ACGGC 4 cut(s) 187, 343, 361, 397
BcnI CCSGG 1 cut(s) 415
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 381
BglII AGATCT 1 cut(s) 297
BisI GCNGC 2 cut(s) 450, 453
BlsI GCNGC 2 cut(s) 451, 454
BmcAI AGTACT 2 cut(s) 97, 103
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 1 cut(s) 439
BmeRI GACNNNNNGTC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 3 cut(s) 6, 309, 441
BmrFI CCNGG 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 6, 246
BpuMI CCSGG 1 cut(s) 415
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 448
BseRI GAGGAG 2 cut(s) 472, 475
BseSI GKGCMC 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 231, 449
BshFI GGCC 2 cut(s) 224, 371
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 491
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 2 cut(s) 210, 415
BslI CCNNNNNNNGG 1 cut(s) 448
BsnI GGCC 2 cut(s) 224, 371
BsoBI CYCGRG 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 312, 491
Bsp143I GATC 1 cut(s) 297
Bsp68I TCGCGA 1 cut(s) 231
BspACI CCGC 4 cut(s) 449, 452, 478, 484
BspANI GGCC 2 cut(s) 224, 371
BspFNI CGCG 2 cut(s) 231, 449
BspLI GGNNCC 3 cut(s) 6, 309, 441
BspT107I GGYRCC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 176, 373
BstFNI CGCG 2 cut(s) 231, 449
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 4 cut(s) 175, 336, 345, 381
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 413
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 231, 449
BstV2I GAAGAC 2 cut(s) 6, 246
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 2 cut(s) 224, 371
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 176, 373
CaiI CAGNNNCTG 1 cut(s) 501
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 96, 102
CviAII CATG 2 cut(s) 253, 367
CviQI GTAC 2 cut(s) 96, 102
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DriI GACNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 2 cut(s) 222, 369
Eam1104I CTCTTC 1 cut(s) 413
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 413
EciI GGCGGA 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 439
Eco47III AGCGCT 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 489
EcoRV GATATC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 256, 370
FaiI YATR 2 cut(s) 254, 368
FatI CATG 2 cut(s) 252, 366
Fnu4HI GCNGC 2 cut(s) 450, 453
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 2 cut(s) 450, 453
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 450, 453
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 2 cut(s) 224, 371
HapII CCGG 2 cut(s) 210, 415
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 256, 370
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 397, 421
HpaII CCGG 2 cut(s) 210, 415
HphI GGTGA 3 cut(s) 30, 271, 403
Hpy166II GTNNAC 2 cut(s) 262, 411
Hpy188I TCNGA 3 cut(s) 199, 390, 426
Hpy188III TCNNGA 3 cut(s) 74, 230, 290
Hpy8I GTNNAC 2 cut(s) 262, 411
Hpy99I CGWCG 7 cut(s) 220, 223, 248, 251, 355, 358, 409
HpyAV CCTTC 2 cut(s) 33, 465
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 336, 345, 381
Hsp92II CATG 2 cut(s) 256, 370
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 10, 486
LpnPI CCDG 3 cut(s) 223, 385, 428
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 7 cut(s) 6, 9, 89, 92, 248, 251, 430
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 312, 491
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 8 cut(s) 19, 37, 46, 51, 159, 226, 450, 453
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 2 cut(s) 210, 415
MspR9I CCNGG 1 cut(s) 415
MvnI CGCG 2 cut(s) 231, 449
MwoI GCNNNNNNNGC 4 cut(s) 175, 336, 345, 381
NciI CCSGG 1 cut(s) 415
NdeII GATC 1 cut(s) 297
NlaIII CATG 2 cut(s) 256, 370
NlaIV GGNNCC 3 cut(s) 6, 309, 441
NmuCI GTSAC 1 cut(s) 179
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 288
PciI ACATGT 1 cut(s) 252
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 2 cut(s) 451, 454
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PscI ACATGT 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 491
PspN4I GGNNCC 3 cut(s) 6, 309, 441
PspPI GGNCC 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 501
PsuI RGATCY 1 cut(s) 297
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 2 cut(s) 97, 103
RsaNI GTAC 2 cut(s) 96, 102
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 491
SatI GCNGC 2 cut(s) 450, 453
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 439
ScaI AGTACT 2 cut(s) 97, 103
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 2 cut(s) 312, 491
SetI ASST 6 cut(s) 43, 124, 151, 476, 491, 503
Sfr274I CTCGAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 98
Sse9I AATT 1 cut(s) 428
SsiI CCGC 4 cut(s) 449, 452, 478, 484
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 289, 395
TasI AATT 1 cut(s) 428
TatI WGTACW 2 cut(s) 95, 101
TauI GCSGC 2 cut(s) 452, 455
TfiI GAWTC 1 cut(s) 397
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 355
TspGWI ACGGA 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 439
XceI RCATGY 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 288
XspI CTAG 1 cut(s) 99
ZrmI AGTACT 2 cut(s) 97, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.