Rroxscaffold_4G00283540

LRR receptor-like serine threonine-protein kinase At3g47570

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0020460
Physical Location & Seq
Forward (+)
5441457 .. 5446116
4660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283540.1

Sequence Viewer

Length: 429 bp
ATGATGCTGGATCTCGGACCGTTCTCCGACGAGAACTTCGACCGGAAGAAGTGGGTGAAACTCGGCGTGCCAGAGTCGCCACCCGCAAGACTCAGTCGACAAGCACCTCGTGGGTCTGGAGATGAAAATCCAGATGGTCTCGGAAGAGAGTGTGGAAAGGGTCAGGAAGAGAAAGAGAAGCTTCTGGAATTCTGTAAGCACGTTGGGCTTGAGTATGGAATGGGTAGTGAGGTGTCAACATATGGAGATGTCTACAGCTTCGGCATTCTCTTGTTAGAGATGTTTACAGGAAGAGACCCACTGACCCACATGTTTGTGGACGGGTTTGAACCTTCACAAGTTTGTGAAGATGGCCTTCTGCGAGCGAGTTTTAGAGATTGCAGATTCATCACTTGTTCAAGTAGGCAATCCCAGCCAGAGCACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.97

Weight (kDa)

4.98

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020460)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374301
rosa_roxburghii Rroxscaffold_4G00283540
rosa_samantha Rh1AG393500 Rh1BG357700 Rh1CG370700 Rh1DG388100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 97, 252
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 2 cut(s) 329, 399
AluBI AGCT 2 cut(s) 181, 258
AluI AGCT 2 cut(s) 181, 258
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 2 cut(s) 143, 288
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 17
BauI CACGAG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 423
BccI CCATC 2 cut(s) 128, 344
BcoDI GTCTC 2 cut(s) 143, 288
BfmI CTRYAG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 143, 288
BsaWI WCCGGW 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 126
BseMII CTCAG 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 143, 288
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 2 cut(s) 143, 288
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 18
BspTNI GGTCTC 2 cut(s) 143, 288
BssMI GATC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 3 cut(s) 139, 162, 286
BstC8I GCNNGC 2 cut(s) 68, 363
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 143, 288
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 76, 205, 412
BstNSI RCATGY 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 68, 363
Cfr13I GGNCC 1 cut(s) 17
CpoI CGGWCCG 1 cut(s) 17
CspI CGGWCCG 1 cut(s) 17
CviAII CATG 1 cut(s) 310
CviJI RGCY 5 cut(s) 181, 208, 258, 354, 415
CviKI_1 RGCY 5 cut(s) 181, 208, 258, 354, 415
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 3 cut(s) 139, 162, 286
EarI CTCTTC 3 cut(s) 139, 162, 286
Eco31I GGTCTC 2 cut(s) 143, 288
Eco47I GGWCC 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 188
FaeI CATG 1 cut(s) 313
FaiI YATR 4 cut(s) 216, 241, 243, 311
FalI AAGNNNNNCTT 4 cut(s) 165, 197, 339, 371
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 241
FblI GTMKAC 2 cut(s) 97, 252
GsaI CCCAGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 354
HapII CCGG 1 cut(s) 43
Hin1II CATG 1 cut(s) 313
HincII GTYRAC 2 cut(s) 98, 237
HindII GTYRAC 2 cut(s) 98, 237
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 3 cut(s) 74, 90, 384
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 5 cut(s) 98, 237, 253, 285, 319
Hpy188I TCNGA 3 cut(s) 17, 28, 143
Hpy188III TCNNGA 4 cut(s) 117, 131, 164, 185
Hpy8I GTNNAC 5 cut(s) 98, 237, 253, 285, 319
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 342, 365
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 205, 412
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 56, 84, 102, 144, 149, 170, 273, 425
MaeII ACGT 1 cut(s) 201
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 5 cut(s) 58, 156, 179, 303, 359
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 188
MlyI GAGTC 2 cut(s) 83, 84
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 2 cut(s) 117, 223
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 76, 205, 412
NdeI CATATG 1 cut(s) 241
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 313
NmeAIII GCCGAG 1 cut(s) 42
NspI RCATGY 1 cut(s) 313
PciI ACATGT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 384
PflFI GACNNNGTC 1 cut(s) 93
PleI GAGTC 2 cut(s) 82, 84
PpsI GAGTC 2 cut(s) 82, 84
PscI ACATGT 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 314
Rsr2I CGGWCCG 1 cut(s) 17
RsrII CGGWCCG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 83, 84
SduI GDGCHC 1 cut(s) 423
SetI ASST 6 cut(s) 109, 183, 204, 234, 260, 334
SfcI CTRYAG 1 cut(s) 253
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 188
SsiI CCGC 1 cut(s) 84
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 39, 97
TasI AATT 1 cut(s) 188
TfiI GAWTC 1 cut(s) 384
TscAI CASTG 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 138, 376
TspRI CASTG 1 cut(s) 306
Tth111I GACNNNGTC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 2 cut(s) 97, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.