Rh1AG393500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020460
Physical Location & Seq
Reverse (-)
62177901 .. 62179133
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG393500.1

Sequence Viewer

Length: 351 bp
ATGATGCTGGATCTCGGTCCGTTCTCAGACGAGAACTTCGACCGTAAGAAGTGGCTGAAACTCGGCGTGCCAGAGTCGCCACCCGCAAGACTCAGTCGACAAGCACCTCGTGGATCTGGAGATGAAAATCCAGATGGTCTCGGAAGAGAGTGTGGAAAGGTCAGGAAGAGAAAGAGAAGCTTCTGGAAGCACGTTGGGAGACTTTTCCAGGACTTTTGTGGTGAATTTGGTCATGTACTTCCAAATCAATCGACATTGTTCCGTTGGAAAGGCAAGAACAGTATTTTTGGAAGCAAGTCAACACTGCTTGTTCGTTACTTCAAACTAATTTCAGCCAAGCAAAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.29

Weight (kDa)

10.33

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020460)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374301
rosa_roxburghii Rroxscaffold_4G00283540
rosa_samantha Rh1AG393500 Rh1BG357700 Rh1CG370700 Rh1DG388100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 97
AciI CCGC 1 cut(s) 84
AclWI GGATC 2 cut(s) 18, 121
AcsI RAATTY 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 143, 193
AlwI GGATC 2 cut(s) 18, 121
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 233
AvaII GGWCC 1 cut(s) 17
BauI CACGAG 1 cut(s) 108
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 143, 193
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 209
BseJI GATNNNNATC 1 cut(s) 126
BseMII CTCAG 2 cut(s) 39, 106
Bsh1285I CGRYCG 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 143, 193
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 10, 113
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 38, 105
BspPI GGATC 2 cut(s) 18, 121
BspTNI GGTCTC 1 cut(s) 143
BssMI GATC 2 cut(s) 10, 113
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 44, 281
Bst6I CTCTTC 2 cut(s) 139, 161
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 25, 92
BstKTI GATC 2 cut(s) 13, 116
BstMAI GTCTC 2 cut(s) 143, 193
BstMBI GATC 2 cut(s) 10, 113
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 10, 113
BstYI RGATCY 2 cut(s) 10, 113
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 17
CpoI CGGWCCG 1 cut(s) 17
Csp6I GTAC 1 cut(s) 236
CspI CGGWCCG 1 cut(s) 17
CviAII CATG 1 cut(s) 233
CviJI RGCY 3 cut(s) 55, 180, 335
CviKI_1 RGCY 3 cut(s) 55, 180, 335
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 25, 92
DpnI GATC 2 cut(s) 12, 115
DpnII GATC 2 cut(s) 10, 113
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 2 cut(s) 139, 161
EarI CTCTTC 2 cut(s) 139, 161
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 236
FaiI YATR 1 cut(s) 234
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 1 cut(s) 232
FauI CCCGC 1 cut(s) 91
FblI GTMKAC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 138
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 2 cut(s) 98, 300
HindII GTYRAC 2 cut(s) 98, 300
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 2 cut(s) 74, 90
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 98, 300
Hpy188I TCNGA 3 cut(s) 28, 143, 350
Hpy188III TCNNGA 4 cut(s) 117, 131, 163, 184
Hpy8I GTNNAC 2 cut(s) 98, 300
HpyCH4III ACNGT 2 cut(s) 44, 281
HpyCH4IV ACGT 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 25, 92
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 2 cut(s) 10, 113
LpnPI CCDG 7 cut(s) 84, 102, 144, 148, 169, 194, 221
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 12, 115
MboI GATC 2 cut(s) 10, 113
MboII GAAGA 2 cut(s) 156, 178
MflI RGATCY 2 cut(s) 10, 113
MluCI AATT 2 cut(s) 224, 327
MlyI GAGTC 2 cut(s) 83, 84
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 2 cut(s) 10, 113
NlaIII CATG 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PflFI GACNNNGTC 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 207
PleI GAGTC 2 cut(s) 82, 84
PpsI GAGTC 2 cut(s) 82, 84
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 2 cut(s) 10, 113
PsyI GACNNNGTC 1 cut(s) 93
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
Rsr2I CGGWCCG 1 cut(s) 17
RsrII CGGWCCG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 10, 113
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 83, 84
ScrFI CCNGG 1 cut(s) 209
SetI ASST 4 cut(s) 109, 162, 182, 195
SinI GGWCC 1 cut(s) 17
Sse9I AATT 2 cut(s) 224, 327
SsiI CCGC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 44, 281
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 39, 97, 251
TaqII GACCGA 1 cut(s) 5
TasI AATT 2 cut(s) 224, 327
TatI WGTACW 1 cut(s) 235
TscAI CASTG 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 9, 251
TspRI CASTG 1 cut(s) 309
Tth111I GACNNNGTC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.