Rh1CG370700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020460
Physical Location & Seq
Reverse (-)
64078895 .. 64080717
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG370700.1

Sequence Viewer

Length: 279 bp
ATGCCGGAGCGGTTTAGGCACATATTAGATTTAAGTTTCCACATGCCTCTCATGTGCGGTCCAATTTCATCATCGTCATCCTATGGATCCATAGGACTCGCCAAGCCTGAAACTCGGAAGGAGTGGGTGAAACTCGGCGTGCCAGAGTCGCCACCCGCAAGACTCAGTCGACAAGCACCTCGTGGATCTGGTGATGAAAATCCAGATGGTCACCGAAGAGAGTGTGGAAGGGTCAGGGGAGAAACAGAAGCTTCTGGAAGCACGTTGGGGTTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.97

Weight (kDa)

8.8

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020460)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0374301
rosa_roxburghii Rroxscaffold_4G00283540
rosa_samantha Rh1AG393500 Rh1BG357700 Rh1CG370700 Rh1DG388100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 169
AciI CCGC 3 cut(s) 10, 57, 156
AclWI GGATC 3 cut(s) 81, 94, 193
AdeI CACNNNGTG 1 cut(s) 182
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AlwI GGATC 3 cut(s) 81, 94, 193
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 3 cut(s) 139, 203, 203
AvaII GGWCC 1 cut(s) 59
BamHI GGATCC 1 cut(s) 86
BauI CACGAG 1 cut(s) 180
BccI CCATC 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 198
BseGI GGATG 1 cut(s) 77
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 5
Bsp143I GATC 2 cut(s) 86, 185
BspACI CCGC 3 cut(s) 10, 57, 156
BspCNI CTCAG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 3 cut(s) 81, 94, 193
BsrBI CCGCTC 1 cut(s) 10
BssMI GATC 2 cut(s) 86, 185
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 164
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 2 cut(s) 89, 188
BstMBI GATC 2 cut(s) 86, 185
BstMWI GCNNNNNNNGC 2 cut(s) 16, 148
BstNSI RCATGY 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 209
BstX2I RGATCY 2 cut(s) 86, 185
BstYI RGATCY 2 cut(s) 86, 185
BtsCI GGATG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 43, 52
CviJI RGCY 3 cut(s) 106, 251, 276
CviKI_1 RGCY 3 cut(s) 106, 251, 276
DdeI CTNAG 1 cut(s) 164
DpnI GATC 2 cut(s) 88, 187
DpnII GATC 2 cut(s) 86, 185
DraIII CACNNNGTG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 209
FaeI CATG 2 cut(s) 46, 55
FaiI YATR 5 cut(s) 23, 44, 53, 84, 92
FatI CATG 2 cut(s) 42, 51
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 1 cut(s) 169
FokI GGATG 1 cut(s) 64
HapII CCGG 1 cut(s) 5
Hin1II CATG 2 cut(s) 46, 55
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 3 cut(s) 96, 146, 162
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 139, 203, 203
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 203, 255
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 112, 222
HpyCH4IV ACGT 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 148
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 2 cut(s) 46, 55
Kzo9I GATC 2 cut(s) 86, 185
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 7 cut(s) 18, 120, 156, 174, 216, 220, 240
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 88, 187
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 86, 185
MboII GAAGA 1 cut(s) 228
MflI RGATCY 2 cut(s) 86, 185
MluCI AATT 1 cut(s) 63
MlyI GAGTC 3 cut(s) 90, 155, 156
MnlI CCTC 2 cut(s) 57, 189
MseI TTAA 1 cut(s) 32
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 16, 148
NdeII GATC 2 cut(s) 86, 185
NlaIII CATG 2 cut(s) 46, 55
NlaIV GGNNCC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 46
PflFI GACNNNGTC 1 cut(s) 165
PleI GAGTC 3 cut(s) 90, 154, 156
PpsI GAGTC 3 cut(s) 90, 154, 156
PspEI GGTNACC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 2 cut(s) 86, 185
PsyI GACNNNGTC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 2 cut(s) 86, 185
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 3 cut(s) 90, 155, 156
SetI ASST 3 cut(s) 181, 253, 266
SinI GGWCC 1 cut(s) 59
Sse9I AATT 1 cut(s) 63
SsiI CCGC 3 cut(s) 10, 57, 156
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 169
TasI AATT 1 cut(s) 63
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 57, 210
Tth111I GACNNNGTC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 59
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.