Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0024731

Physical Location & Seq

Genomic Coordinates Reverse (-)

10546719 .. 10551031

Gene Structure 4313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTTAAAGGTGCTTTCTGTATAATCACTGGCCTCAGAAGAGATTTATTTTACCACCAAGGGTTTCATTCAAGTAATCTATTGTTAATCCCTGTTTTTGGAGTTATTAGGGATGGAGTCTCCAGTGAAGACATCTCGTCCATGGCTAAACCGCTGTTCCAGTGTTGTCATTACAGGTATGTTTTGGATTCTGAAACTGCTGTTGCTCTCACTTTGTCAAGGCTCCAGGAGATGCGTCAATTACCTTGGTTTTTCATGACTAGAATATACTGTGGTTATATTTGCTCTGTGATAGTTAACTCAACACAACTACCATCTTGGATTGGAGTAATTGGTGGTGTAAAAAAGAAAGAAAACAATGGGAGGCACGCTTGGGTTGCCAGATTTGATGAAGGCTACGGCGAAGATTTTGGGAAATGGAGGATTGGGGTCAGCTTACAAGGATGTGATGGGTACGGGTTGTCCGTGGTGGTGAAGAGGATGAGGGAGATGAATAGATTGGGGAGAGATGGAATTGATGCTGAAATGAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

178

Amino Acids

20.29

Weight (kDa)

9.1

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024731)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0366391
rosa_roxburghii	Rroxscaffold_4G00289950 Rroxscaffold_4G00290230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	72
AhdI	GACNNNNNGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	135
BccI	CCATC	4 cut(s)	107, 322, 443, 503
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	227
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	222, 508
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	2 cut(s)	106, 209
BsaJI	CCNNGG	4 cut(s)	58, 141, 245, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	34, 123, 160
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	58, 141, 245, 465
BseGI	GGATG	3 cut(s)	118, 449, 486
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	3 cut(s)	34, 123, 160
BshFI	GGCC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	34, 123, 160
BssECI	CCNNGG	4 cut(s)	58, 141, 245, 465
BssT1I	CCWWGG	3 cut(s)	58, 141, 245
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	3 cut(s)	34, 470, 524
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	2 cut(s)	141, 465
BstF5I	GGATG	3 cut(s)	118, 449, 486
BstMAI	GTCTC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	2 cut(s)	141, 465
BtsCI	GGATG	3 cut(s)	118, 449, 486
BtsIMutI	CAGTG	3 cut(s)	27, 130, 167
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	255
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	142, 256
CviJI	RGCY	5 cut(s)	33, 146, 223, 396, 435
CviKI_1	RGCY	5 cut(s)	33, 146, 223, 396, 435
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	35
DraI	TTTAAA	1 cut(s)	7
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	34, 470, 524
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	3 cut(s)	34, 470, 524
Eco130I	CCWWGG	3 cut(s)	58, 141, 245
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	58, 141, 245
ErhI	CCWWGG	3 cut(s)	58, 141, 245
FaeI	CATG	2 cut(s)	145, 259
FaiI	YATR	6 cut(s)	23, 143, 180, 257, 268, 279
FatI	CATG	2 cut(s)	141, 255
FokI	GGATG	3 cut(s)	125, 456, 493
FspBI	CTAG	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	106, 209
HaeIII	GGCC	1 cut(s)	33
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	145, 259
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	117, 188
HpaI	GTTAAC	1 cut(s)	298
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	38, 193
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	145, 259
KspAI	GTTAAC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	15, 105, 136, 160, 173, 212, 239, 394
LweI	GCATC	2 cut(s)	222, 508
MaeI	CTAG	1 cut(s)	261
MboII	GAAGA	4 cut(s)	51, 140, 416, 487
MluCI	AATT	3 cut(s)	239, 330, 513
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	44, 357, 414, 471, 477, 525
MseI	TTAA	3 cut(s)	6, 86, 297
MspA1I	CMGCKG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	141
NlaIII	CATG	2 cut(s)	145, 259
NlaIV	GGNNCC	1 cut(s)	224
PagI	TCATGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	6, 86, 297
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	5 cut(s)	13, 179, 247, 437, 536
SfaNI	GCATC	2 cut(s)	222, 508
Sse9I	AATT	3 cut(s)	239, 330, 513
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	3 cut(s)	58, 141, 245
TaaI	ACNGT	1 cut(s)	272
TasI	AATT	3 cut(s)	239, 330, 513
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	6, 86, 297
Tru9I	TTAA	3 cut(s)	6, 86, 297
TscAI	CASTG	3 cut(s)	34, 130, 167
TspDTI	ATGAA	4 cut(s)	56, 244, 405, 506
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	3 cut(s)	34, 130, 167
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.