Rroxscaffold_4G00290230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0024731
Physical Location & Seq
Reverse (-)
10754970 .. 10760676
5707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290230.1

Sequence Viewer

Length: 450 bp
ATGAAAGTGACAGAGCCAGTCCTCTCTGCATGCATTCAAACAGTTAAGGACTGCAGAGGGAATGAGCAACCTCCAATTATTGCCTCTCAAAATCTCAAATGGTATACCCTGCGACGTTTACCATTAGTAAAGGTTCAAGACTTTACTTTGAACCATAATACGGAAGACGGAGAGAGAGAGAATGTTGCTCGTAACTCGGATGGAGTCTCCAGTGAAGACATCTCGTCCATGGCTAAACCGCTGTTCCAGTGTTGTCATTACAGGCTGTGTTTGGTAGAGCTTTTCAGCTCCCGTGCTTATAAGCCAGGTTCAAATTGGTGTTTGGTAACTCGGCTTCTTGCCAACTTTTTTCAGAAAGCTGCTGTGGCTTCCTTAGATAGCGGAAGCCGAAAATGCAGCTTCGGAAGCCGAAGCCGGCGAAAACACCGTAGCGGTGTTACCGTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.77

Weight (kDa)

9.34

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024731)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0366391
rosa_roxburghii Rroxscaffold_4G00289950 Rroxscaffold_4G00290230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccI GTMKAC 1 cut(s) 104
AciI CCGC 3 cut(s) 239, 381, 432
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 4 cut(s) 38, 137, 151, 312
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 4 cut(s) 280, 288, 359, 399
AluI AGCT 4 cut(s) 280, 288, 359, 399
Alw26I GTCTC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 359, 396
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
BbsI GAAGAC 2 cut(s) 171, 222
BbvI GCAGC 2 cut(s) 346, 408
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 211
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 2 cut(s) 360, 397
BlsI GCNGC 2 cut(s) 361, 398
Bme1390I CCNGG 1 cut(s) 306
BmeRI GACNNNNNGTC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 171, 222
BpmI CTGGAG 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 414
Bse1I ACTGG 3 cut(s) 17, 210, 247
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 160
BseNI ACTGG 3 cut(s) 17, 210, 247
BseXI GCAGC 2 cut(s) 346, 408
BsiSI CCGG 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 3 cut(s) 239, 381, 432
BspMAI CTGCAG 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 414
BsrI ACTGG 3 cut(s) 17, 210, 247
BssAI RCCGGY 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 228
BssNAI GTATAC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 228
Bst1107I GTATAC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 43, 428, 442
BstC8I GCNNGC 2 cut(s) 31, 416
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 365, 393, 405
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 346, 408
BstV2I GAAGAC 2 cut(s) 171, 222
BstZ17I GTATAC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 217, 254
Cac8I GCNNGC 2 cut(s) 31, 416
Cfr10I RCCGGY 1 cut(s) 414
CviAII CATG 2 cut(s) 30, 229
DdeI CTNAG 1 cut(s) 373
DriI GACNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 33, 232
FaiI YATR 5 cut(s) 31, 105, 156, 230, 300
FatI CATG 2 cut(s) 29, 228
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 360, 397
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 360, 397
GluI GCNGC 2 cut(s) 360, 397
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 1 cut(s) 415
Hin1II CATG 2 cut(s) 33, 232
HinfI GANTC 1 cut(s) 204
HpaII CCGG 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 105, 119
Hpy188I TCNGA 3 cut(s) 199, 354, 404
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 2 cut(s) 105, 119
Hpy99I CGWCG 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 43, 428, 442
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 29, 33, 54, 396
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 393, 405
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 2 cut(s) 33, 232
KroI GCCGGC 1 cut(s) 414
KroNI GCCGGC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 8 cut(s) 30, 122, 223, 247, 260, 291, 318, 428
Lsp1109I GCAGC 2 cut(s) 346, 408
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 4 cut(s) 7, 191, 325, 436
MboII GAAGA 2 cut(s) 176, 227
MluCI AATT 2 cut(s) 75, 313
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 4 cut(s) 32, 50, 81, 94
Mph1103I ATGCAT 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 414
MseI TTAA 2 cut(s) 45, 448
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 365, 393, 405
NaeI GCCGGC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 228
NgoMIV GCCGGC 1 cut(s) 414
NlaIII CATG 2 cut(s) 33, 232
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PctI GAATGC 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 361, 398
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PstI CTGCAG 1 cut(s) 56
SaqAI TTAA 2 cut(s) 45, 448
SatI GCNGC 2 cut(s) 360, 397
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 306
SetI ASST 8 cut(s) 73, 118, 135, 282, 290, 310, 361, 401
SfcI CTRYAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 33
Sse9I AATT 2 cut(s) 75, 313
SsiI CCGC 3 cut(s) 239, 381, 432
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 43, 428, 442
TaiI ACGT 1 cut(s) 118
TasI AATT 2 cut(s) 75, 313
Tru1I TTAA 2 cut(s) 45, 448
Tru9I TTAA 2 cut(s) 45, 448
TscAI CASTG 2 cut(s) 217, 254
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 359, 396
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 176, 183
TspRI CASTG 2 cut(s) 217, 254
XceI RCATGY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.