Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0020253

Physical Location & Seq

Genomic Coordinates Forward (+)

23080644 .. 23082858

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATTTGGCAAGCTCACACCAAAGAGCTTGATGAAGTGAAGCTTCTGCAAAATCTGTCTCATCAGAAAATCGTGAAGTATTTGGGTACGGCTTGGGAGGAGGAAAGCTTGTATATTCTGTCGGAATTTGTCTCCGATAAATCTATAAAATCACTATTGGTGAAATTCGTACCTTTGCCTGAGACTCCTCCAATTCCAACCGACCACCCCAATGTAGAGCGCCGCCGCCTCCCCACTCCAAACCCTCTCTCTCCCTCCCTCCTAGCACCTTCTCCGGCGCAAAACGACCACATCAGCATCACCCTTCAATCTGGACTGGAGCTTCGCCAGCAACAAGCCCAAACTGAAATGGCCAGCCCCCAAATCTTCTCTCTACACCCAGAACCTCTTCGACTTCGCATTCAACCAAGAAGCCCAGAAAAGCCGCCGAGGACGGCGGTTCTGATGGCGACTATTTCTGGTGCAAAGTATGTGAAGGGTATATCTTACTGGATGGCACCTGAAATCTTTCTCCAGACTGGTCATGGCATGCAAGTACAATCAGTGGCGGAGCCAAAATTGGAGTTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

190

Amino Acids

21.45

Weight (kDa)

7.99

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43930 AT2G43930
rosa_chinensis	RchiOBHm_Chr2g0104591
rosa_roxburghii	Rroxscaffold_4G00302700
rosa_rugosa	Rorug01G0229900
rosa_samantha	Rh5CG187800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	496
AciI	CCGC	5 cut(s)	223, 226, 425, 437, 548
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	125, 164
AfaI	GTAC	3 cut(s)	88, 171, 537
AgsI	TTSAA	2 cut(s)	308, 404
AluBI	AGCT	5 cut(s)	14, 28, 43, 108, 322
AluI	AGCT	5 cut(s)	14, 28, 43, 108, 322
Alw26I	GTCTC	3 cut(s)	63, 136, 176
AoxI	GGCC	1 cut(s)	351
ApoI	RAATTY	2 cut(s)	125, 164
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	2 cut(s)	387, 507
AspLEI	GCGC	2 cut(s)	222, 280
AsuHPI	GGTGA	2 cut(s)	172, 292
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	496
BccI	CCATC	2 cut(s)	439, 487
BceAI	ACGGC	2 cut(s)	105, 450
BcoDI	GTCTC	3 cut(s)	63, 136, 176
BfaI	CTAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	3 cut(s)	223, 226, 425
BlsI	GCNGC	3 cut(s)	224, 227, 426
BmiI	GGNNCC	2 cut(s)	498, 552
BmsI	GCATC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	338, 497
BsaJI	CCNNGG	1 cut(s)	428
BsaXI	ACNNNNNCTCC	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	321, 494, 523
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	321, 494, 523
BseRI	GAGGAG	2 cut(s)	113, 177
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	63, 136, 176
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	353
BspACI	CCGC	5 cut(s)	223, 226, 425, 437, 548
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	498, 552
BspT107I	GGYRCC	1 cut(s)	496
BsrI	ACTGG	3 cut(s)	321, 494, 523
BssECI	CCNNGG	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	12, 329, 355, 530
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	498
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	2 cut(s)	222, 280
BstMAI	GTCTC	3 cut(s)	63, 136, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	4 cut(s)	12, 329, 355, 530
CfoI	GCGC	2 cut(s)	222, 280
Csp6I	GTAC	3 cut(s)	87, 170, 536
CviAII	CATG	2 cut(s)	524, 529
CviQI	GTAC	3 cut(s)	87, 170, 536
DdeI	CTNAG	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	563
FaeI	CATG	2 cut(s)	527, 532
FaiI	YATR	6 cut(s)	114, 146, 471, 482, 525, 530
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	2 cut(s)	523, 528
Fnu4HI	GCNGC	3 cut(s)	223, 226, 425
FokI	GGATG	1 cut(s)	505
Fsp4HI	GCNGC	3 cut(s)	223, 226, 425
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	221, 279
GluI	GCNGC	3 cut(s)	223, 226, 425
GsuI	CTGGAG	2 cut(s)	338, 497
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	2 cut(s)	222, 280
Hin1II	CATG	2 cut(s)	527, 532
Hin6I	GCGC	2 cut(s)	220, 278
HinP1I	GCGC	2 cut(s)	220, 278
HindIII	AAGCTT	2 cut(s)	41, 106
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	172, 292
Hpy188I	TCNGA	4 cut(s)	66, 124, 136, 444
Hpy188III	TCNNGA	3 cut(s)	73, 312, 514
HpyAV	CCTTC	3 cut(s)	279, 314, 469
HpyCH4V	TGCA	3 cut(s)	49, 464, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	527, 532
HspAI	GCGC	2 cut(s)	220, 278
LmnI	GCTCC	2 cut(s)	319, 550
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	263
MboII	GAAGA	2 cut(s)	358, 380
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	4 cut(s)	125, 164, 192, 557
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	2 cut(s)	102, 221
MnlI	CCTC	9 cut(s)	91, 94, 198, 239, 255, 265, 269, 396, 423
Mox20I	TGGCCA	1 cut(s)	353
MroXI	GAANNNNTTC	2 cut(s)	387, 507
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	527, 532
NlaIV	GGNNCC	2 cut(s)	498, 552
NmeAIII	GCCGAG	1 cut(s)	453
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	2 cut(s)	387, 507
PkrI	GCNGC	3 cut(s)	224, 227, 426
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	498, 552
RsaI	GTAC	3 cut(s)	88, 171, 537
RsaNI	GTAC	3 cut(s)	87, 170, 536
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	223, 226, 425
SchI	GAGTC	1 cut(s)	178
SetI	ASST	9 cut(s)	16, 30, 45, 110, 175, 271, 324, 388, 502
SfaNI	GCATC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	210
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	4 cut(s)	125, 164, 192, 557
SsiI	CCGC	5 cut(s)	223, 226, 425, 437, 548
SspMI	CTAG	1 cut(s)	263
TaqI	TCGA	1 cut(s)	391
TasI	AATT	4 cut(s)	125, 164, 192, 557
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	3 cut(s)	225, 228, 427
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	549
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	549
XapI	RAATTY	2 cut(s)	125, 164
XceI	RCATGY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XmnI	GAANNNNTTC	2 cut(s)	387, 507
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.