Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0017768

Physical Location & Seq

Genomic Coordinates Reverse (-)

33187337 .. 33189377

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCAATTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGTACTTCATCTCAGGTTCATGACACCAGAGGTTTTAGCCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCACTTTTCCATGCCATTGCATTGCAGCGGTGCATACTTTTATGCACACAGGTTAGTTTACAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

154

Amino Acids

17.31

Weight (kDa)

5.25

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	3 - 149	1.2e-19	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0352471
rosa_laevigata	RLG00000028332
rosa_multiflora	Rmu_sc0000911.1_g000003 Rmu_sc0000911.1_g000012 Rmu_sc0007697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00302690 Rroxscaffold_4G00302740 Rroxscaffold_4G00302800
rosa_rugosa	Rorug01G0229900
rosa_samantha	Rh1BG214000 Rh1DG239900
rosa_wichuraiana	Rw1G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	424
AcuI	CTGAAG	3 cut(s)	153, 276, 294
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	9
BfaI	CTAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	411, 416
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	411, 416
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	411, 416
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 348
CciI	TCATGA	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	296, 407
CviJI	RGCY	2 cut(s)	315, 397
CviKI_1	RGCY	2 cut(s)	315, 397
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco57I	CTGAAG	3 cut(s)	153, 276, 294
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	299, 410
FaiI	YATR	7 cut(s)	251, 297, 366, 408, 431, 439, 463
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 320, 352
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	295, 406
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	422
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	2 cut(s)	299, 410
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	262, 455
Hpy188I	TCNGA	3 cut(s)	9, 256, 274
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	2 cut(s)	262, 455
HpyAV	CCTTC	5 cut(s)	67, 177, 269, 314, 322
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	7 cut(s)	143, 149, 213, 416, 421, 429, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	299, 410
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MfeI	CAATTG	1 cut(s)	22
MluCI	AATT	5 cut(s)	22, 45, 186, 214, 346
MnlI	CCTC	5 cut(s)	10, 87, 172, 235, 299
MroXI	GAANNNNTTC	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	299, 410
NlaIV	GGNNCC	1 cut(s)	333
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	8 cut(s)	21, 169, 227, 280, 294, 310, 333, 450
Sse9I	AATT	5 cut(s)	22, 45, 186, 214, 346
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	64
TasI	AATT	5 cut(s)	22, 45, 186, 214, 346
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	2 cut(s)	215, 348
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	273, 284, 407
TspRI	CASTG	2 cut(s)	215, 348
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.