Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000911.1

Orthogroup ID

OG0017768

Physical Location & Seq

Genomic Coordinates Forward (+)

50614 .. 51438

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000911.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggtgaacattgaggtcactgttatttccagagacaccattaaaccatcaactgcttcctcttcgcctcgccttctacaaccttacaagcttaacatttgcgatcagctcgttccctacacttatgtcccaatgattttcttctaccccattactgtccccagcttcaatctccttcaagccctaatccacttgagaaactccctctccgaggccctcactctgtactacccattgtccggaaggataaaaaacaacctctatgtacatgacttcgacgcgggtgttccctaccttgaagctcaagtcaattgtcccatgctcgagtttcttaagcttcgagaaaccgaatggctaaaccacctcgtaccattccatccatttctcaaggaaatggattctgagctactgcccctcaccgcatttcaagccaacatcttcgatggtggaatagcagtgggcatttccttttctcacaagctcattgatggggaaacagccaatgcttttctcaagacttgggctgctatttttcgtggctgtcgccaagaaatcatataccctaatcttgtccaagcctcattagtttttccaccacgagataacttgcctaaaaggtatgtaactatcatggagaggttgtggttcggccagaaaaaggattatgttacaaggagatttctgtttgatgctaaagccatatccgcacttcaagtcgaagcaaagagcgagctcgtgcccaaaccatcacgtattgaggcacttacatgttttctctggaaacatcaaatggctgcctctcgggcgttatcatcaggtaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

274

Amino Acids

31.29

Weight (kDa)

8.8

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0352471
rosa_laevigata	RLG00000028332
rosa_multiflora	Rmu_sc0000911.1_g000003 Rmu_sc0000911.1_g000012 Rmu_sc0007697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00302690 Rroxscaffold_4G00302740 Rroxscaffold_4G00302800
rosa_rugosa	Rorug01G0229900
rosa_samantha	Rh1BG214000 Rh1DG239900
rosa_wichuraiana	Rw1G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	3 cut(s)	281, 420, 705
AcoI	YGGCCR	1 cut(s)	649
AfaI	GTAC	3 cut(s)	227, 267, 369
AfiI	CCNNNNNNNGG	3 cut(s)	211, 239, 658
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	5 cut(s)	169, 179, 299, 428, 713
AluBI	AGCT	8 cut(s)	91, 109, 165, 302, 337, 406, 481, 733
AluI	AGCT	8 cut(s)	91, 109, 165, 302, 337, 406, 481, 733
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	1 cut(s)	27
Ama87I	CYCGRG	2 cut(s)	323, 801
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	2 cut(s)	213, 649
ApeKI	GCWGC	2 cut(s)	524, 794
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	16, 409
AvaI	CYCGRG	2 cut(s)	323, 801
BaeGI	GKGCMC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	2 cut(s)	597, 734
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	511, 781
BccI	CCATC	5 cut(s)	55, 384, 437, 482, 754
BcoDI	GTCTC	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	803
BisI	GCNGC	2 cut(s)	525, 795
BlsI	GCNGC	2 cut(s)	526, 796
BmeT110I	CYCGRG	2 cut(s)	323, 801
BmgT120I	GGNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	679
BpuEI	CTTGAG	4 cut(s)	214, 288, 371, 497
BsaAI	YACGTR	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 626, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 239, 658
BseAI	TCCGGA	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	211, 239, 658
BseMII	CTCAG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	2 cut(s)	511, 781
BseYI	CCCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	215, 651
BsiHKAI	GWGCWC	1 cut(s)	735
BsiHKCI	CYCGRG	2 cut(s)	323, 801
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	3 cut(s)	113, 143, 300
BslI	CCNNNNNNNGG	3 cut(s)	211, 239, 658
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	3 cut(s)	113, 143, 300
BsnI	GGCC	2 cut(s)	215, 651
BsoBI	CYCGRG	2 cut(s)	323, 801
Bsp1286I	GDGCHC	2 cut(s)	735, 741
Bsp13I	TCCGGA	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	281, 420, 705
BspANI	GGCC	2 cut(s)	215, 651
BspCNI	CTCAG	1 cut(s)	394
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	103
BssSI	CACGAG	2 cut(s)	597, 734
Bst2BI	CACGAG	2 cut(s)	597, 734
Bst4CI	ACNGT	2 cut(s)	22, 157
Bst6I	CTCTTC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	731
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 704, 803
BstNSI	RCATGY	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	511, 781
BsuRI	GGCC	2 cut(s)	215, 651
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	18, 462
Cac8I	GCNNGC	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	226, 266, 368
CviAII	CATG	4 cut(s)	269, 319, 631, 768
CviQI	GTAC	3 cut(s)	226, 266, 368
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco53kI	GAGCTC	1 cut(s)	733
Eco88I	CYCGRG	2 cut(s)	323, 801
EcoICRI	GAGCTC	1 cut(s)	733
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	4 cut(s)	272, 322, 634, 771
FaqI	GGGAC	3 cut(s)	113, 143, 300
FatI	CATG	4 cut(s)	268, 318, 630, 767
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	525, 795
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	2 cut(s)	525, 795
GluI	GCNGC	2 cut(s)	525, 795
GsaI	CCCAGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	215, 651
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	272, 322, 634, 771
HindIII	AAGCTT	2 cut(s)	89, 335
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	16, 409
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	211, 403
Hpy188III	TCNNGA	5 cut(s)	30, 240, 341, 514, 778
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	83, 185, 237
HpyCH4III	ACNGT	2 cut(s)	22, 157
HpyCH4IV	ACGT	1 cut(s)	751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 704, 803
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	751
Hsp92II	CATG	4 cut(s)	272, 322, 634, 771
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	43, 175, 253, 665, 763, 801
Lsp1109I	GCAGC	2 cut(s)	511, 781
LweI	GCATC	1 cut(s)	679
MaeII	ACGT	1 cut(s)	751
MaeIII	GTNAC	3 cut(s)	16, 622, 667
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	54, 133, 430
MfeI	CAATTG	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	735, 741
MluCI	AATT	2 cut(s)	310, 820
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	4 cut(s)	42, 93, 333, 823
MslI	CAYNNNNRTG	1 cut(s)	766
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	428, 704, 803
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	272, 322, 634, 771
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	771
PaeR7I	CTCGAG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	767
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	526, 796
Ppu21I	YACGTR	1 cut(s)	752
PscI	ACATGT	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	214
PspXI	VCTCGAGB	1 cut(s)	323
RsaI	GTAC	3 cut(s)	227, 267, 369
RsaNI	GTAC	3 cut(s)	226, 266, 368
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	4 cut(s)	42, 93, 333, 823
SatI	GCNGC	2 cut(s)	525, 795
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	2 cut(s)	735, 741
SfaNI	GCATC	1 cut(s)	679
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	6 cut(s)	193, 303, 323, 332, 386, 512
SmoI	CTYRAG	6 cut(s)	193, 303, 323, 332, 386, 512
Sse9I	AATT	2 cut(s)	310, 820
SsiI	CCGC	3 cut(s)	281, 420, 705
SstI	GAGCTC	1 cut(s)	735
TaaI	ACNGT	2 cut(s)	22, 157
TaiI	ACGT	1 cut(s)	754
TaqI	TCGA	5 cut(s)	276, 324, 340, 441, 717
TasI	AATT	2 cut(s)	310, 820
TatI	WGTACW	2 cut(s)	225, 265
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	4 cut(s)	42, 93, 333, 823
Tru9I	TTAA	4 cut(s)	42, 93, 333, 823
TscAI	CASTG	2 cut(s)	25, 462
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	524, 794
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	2 cut(s)	25, 462
Vha464I	CTTAAG	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	209
XceI	RCATGY	1 cut(s)	771
XhoI	CTCGAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.