Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000911.1

Orthogroup ID

OG0017768

Physical Location & Seq

Genomic Coordinates Forward (+)

8053 .. 8349

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000911.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggtgaacattgaggtcactgttatttccagagacaccattaaaccatcaactgcttcctcttcgcctcaccttctacaaccttacaagctttccattttcgatcagctcattcccaacacttatgtcccaatgattttcttctaccccattactgcccccaacttcaatctccctcaaaccctaatccacttgagaaactccctctccgagaccctaactctgcactacccattgtccggaaggataaaaaacaacctctacgtacatgacttcgacgcgggtgtcccctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

98

Amino Acids

11.1

Weight (kDa)

6.89

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0352471
rosa_laevigata	RLG00000028332
rosa_multiflora	Rmu_sc0000911.1_g000003 Rmu_sc0000911.1_g000012 Rmu_sc0007697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00302690 Rroxscaffold_4G00302740 Rroxscaffold_4G00302800
rosa_rugosa	Rorug01G0229900
rosa_samantha	Rh1BG214000 Rh1DG239900
rosa_wichuraiana	Rw1G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	2 cut(s)	91, 109
AluI	AGCT	2 cut(s)	91, 109
Alw26I	GTCTC	2 cut(s)	27, 206
Aor13HI	TCCGGA	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	16, 62
BccI	CCATC	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	27, 206
BpuEI	CTTGAG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	113, 272
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	27, 206
BsmFI	GGGAC	2 cut(s)	113, 272
Bso31I	GGTCTC	1 cut(s)	206
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	281
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	206
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	27, 206
BstMBI	GATC	1 cut(s)	103
BstSNI	TACGTA	1 cut(s)	265
BstUI	CGCG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	18
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	2 cut(s)	91, 109
CviKI_1	RGCY	2 cut(s)	91, 109
CviQI	GTAC	1 cut(s)	266
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco105I	TACGTA	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	206
FaeI	CATG	1 cut(s)	272
FaiI	YATR	2 cut(s)	126, 270
FaqI	GGGAC	2 cut(s)	113, 272
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	274
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	16, 62
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	30, 240
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	83, 237
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	272
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	43, 253
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	54, 133
MnlI	CCTC	6 cut(s)	7, 70, 78, 186, 215, 269
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	1 cut(s)	42
MspI	CCGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	281
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	265
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	7 cut(s)	18, 75, 85, 93, 111, 261, 267
SgeI	CNNG	7 cut(s)	42, 100, 205, 223, 252, 281, 292
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SnaBI	TACGTA	1 cut(s)	265
SsiI	CCGC	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	102, 276
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.