Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007697.1

Orthogroup ID

OG0017768

Physical Location & Seq

Genomic Coordinates Reverse (-)

11250 .. 14998

Gene Structure 3749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007697.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atggtcaacattgaggtcactgttatttccagatacaccattaaaccatctactgcttcctcttcgcctcaccttctacaaccttacaagctttccatcttcgatcagctcactcccaacacttatttcccaacgattttcttctaccgcattactgtccccagcttcaatctccctcaaaccctaatccaattaagaaactccctctctgagaccctcactctgtactacccattgtccggaaggataaaaaacaacctctacgtacatgactttgatgcgggtgttccctaccttgaagctcaagtcaattgtcccatgctcgagtttcttaagcttcgagaaaccgaatggctaaaccacttcgtaccagtccatccatttctcaaggaaatggattctgagctactgcccctcatctcatgtcaagccaacatcttcgatggtggaatagcaatgggcatttccctttctcacaagctcgctgatggggtaacagccaatgcttttctcaagacttgggctgctatttttcgtggttgtcgccaagaaatcatataccctaatctcttccaagcctcattggtttttccaccacgagataacttgcctaaaaggtatgtaggtctcatggagaggttgtggttcgagcagaaaaaggattacgttacaaggagatttctgtttgatgctaaagccatatccgcacttcaagccaaagcaaagagcgagcccgtgccaaaaccatcacgtattgaggcacttacatgttttctctggaaacatcaaatggctgcctctcgggcatcgtcatcaggtacttctccaaaactctccatagtagcacatgcagtaaatttgaggccacgaatgaacccacaaatgttgttggataataccattgggaatatcattttgtgggctccggtgttattagatatcttggaagagacagcaacaaagagtggtgatcatgaattctgtgacttggtgaatatgcttcatgaatccctcaacgaatttaacaatgagtacttggagactctgaagggtgaagaaggatttggagccatttgtgacttactagatttgatggaggaagggacttctataaagccaccgcccgagatttacgcattcacgagctggactagaattcttcacaaactagattttggatggggaaagccatttcagattggagtcatcggaaaagttggacctatatttagaaatctaacgatatttgtacaatgcaatcaagaaattgaagcatgggtgactttggaggaaaaacaaatggctatgctagaaaaagattctcaatttctagcgtttgcatctccaaatccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

451

Amino Acids

51.27

Weight (kDa)

6.1

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0352471
rosa_laevigata	RLG00000028332
rosa_multiflora	Rmu_sc0000911.1_g000003 Rmu_sc0000911.1_g000012 Rmu_sc0007697.1_g000004
rosa_roxburghii	Rroxscaffold_4G00302690 Rroxscaffold_4G00302740 Rroxscaffold_4G00302800
rosa_rugosa	Rorug01G0229900
rosa_samantha	Rh1BG214000 Rh1DG239900
rosa_wichuraiana	Rw1G021240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	4 cut(s)	148, 281, 705, 1121
AcsI	RAATTY	4 cut(s)	856, 977, 1019, 1155
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	6 cut(s)	227, 267, 369, 820, 1034, 1251
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	4 cut(s)	169, 299, 713, 1271
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 1047, 1079
AluBI	AGCT	8 cut(s)	91, 109, 165, 302, 337, 406, 481, 1146
AluI	AGCT	8 cut(s)	91, 109, 165, 302, 337, 406, 481, 1146
Alw26I	GTCTC	4 cut(s)	206, 632, 944, 1034
Ama87I	CYCGRG	3 cut(s)	323, 801, 1124
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	1 cut(s)	863
ApeKI	GCWGC	2 cut(s)	524, 794
ApoI	RAATTY	4 cut(s)	856, 977, 1019, 1155
AspS9I	GGNCC	1 cut(s)	1220
AsuHPI	GGTGA	5 cut(s)	62, 980, 1003, 1064, 1291
AvaI	CYCGRG	3 cut(s)	323, 801, 1124
AvaII	GGWCC	1 cut(s)	1220
BanII	GRGCYC	2 cut(s)	735, 925
BauI	CACGAG	2 cut(s)	597, 1141
BbvI	GCAGC	2 cut(s)	511, 781
BccI	CCATC	8 cut(s)	55, 104, 384, 437, 482, 754, 1087, 1173
BclI	TGATCA	1 cut(s)	970
BcoDI	GTCTC	4 cut(s)	206, 632, 944, 1034
BfaI	CTAG	5 cut(s)	1085, 1152, 1169, 1310, 1331
BfrI	CTTAAG	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	803
BisI	GCNGC	2 cut(s)	525, 795
BlsI	GCNGC	2 cut(s)	526, 796
BmcAI	AGTACT	1 cut(s)	1034
Bme18I	GGWCC	1 cut(s)	1220
BmeT110I	CYCGRG	3 cut(s)	323, 801, 1124
BmgT120I	GGNCC	1 cut(s)	1220
BmiI	GGNNCC	2 cut(s)	924, 1069
BmsI	GCATC	4 cut(s)	268, 679, 815, 1349
BpuEI	CTTGAG	3 cut(s)	288, 371, 497
BsaAI	YACGTR	2 cut(s)	265, 752
BsaI	GGTCTC	2 cut(s)	206, 632
BsaWI	WCCGGW	2 cut(s)	239, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	239
BseGI	GGATG	2 cut(s)	376, 1184
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	201, 393
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	511, 781
BseYI	CCCAGC	1 cut(s)	161
BshFI	GGCC	1 cut(s)	865
BsiHKCI	CYCGRG	3 cut(s)	323, 801, 1124
BsiSI	CCGG	2 cut(s)	240, 926
BslFI	GGGAC	3 cut(s)	143, 300, 1117
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	4 cut(s)	206, 632, 944, 1034
BsmFI	GGGAC	3 cut(s)	143, 300, 1117
BsmI	GAATGC	1 cut(s)	1136
BsnI	GGCC	1 cut(s)	865
Bso31I	GGTCTC	2 cut(s)	206, 632
BsoBI	CYCGRG	3 cut(s)	323, 801, 1124
Bsp1286I	GDGCHC	2 cut(s)	735, 925
Bsp13I	TCCGGA	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	1249
Bsp143I	GATC	2 cut(s)	103, 970
BspACI	CCGC	4 cut(s)	148, 281, 705, 1121
BspANI	GGCC	1 cut(s)	865
BspCNI	CTCAG	2 cut(s)	202, 394
BspEI	TCCGGA	1 cut(s)	239
BspHI	TCATGA	2 cut(s)	973, 1003
BspLI	GGNNCC	2 cut(s)	924, 1069
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	2 cut(s)	206, 632
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	1249
BsrI	ACTGG	1 cut(s)	371
BssMI	GATC	2 cut(s)	103, 970
BssSI	CACGAG	2 cut(s)	597, 1141
Bst2BI	CACGAG	2 cut(s)	597, 1141
Bst4CI	ACNGT	2 cut(s)	22, 157
Bst6I	CTCTTC	3 cut(s)	67, 575, 942
BstAFI	CTTAAG	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	1249
BstBAI	YACGTR	2 cut(s)	265, 752
BstC8I	GCNNGC	2 cut(s)	483, 731
BstDEI	CTNAG	2 cut(s)	210, 402
BstF5I	GGATG	2 cut(s)	376, 1184
BstKTI	GATC	2 cut(s)	106, 973
BstMAI	GTCTC	4 cut(s)	206, 632, 944, 1034
BstMBI	GATC	2 cut(s)	103, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	704, 713, 803
BstNSI	RCATGY	2 cut(s)	771, 851
BstSNI	TACGTA	1 cut(s)	265
BstV1I	GCAGC	2 cut(s)	511, 781
BsuRI	GGCC	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	376, 1184
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	483, 731
CciI	TCATGA	2 cut(s)	973, 1003
Cfr13I	GGNCC	1 cut(s)	1220
Csp6I	GTAC	6 cut(s)	226, 266, 368, 819, 1033, 1250
CspCI	CAANNNNNGTGG	2 cut(s)	867, 902
CviAII	CATG	9 cut(s)	269, 319, 423, 631, 768, 848, 974, 1004, 1275
CviQI	GTAC	6 cut(s)	226, 266, 368, 819, 1033, 1250
DdeI	CTNAG	2 cut(s)	210, 402
DpnI	GATC	2 cut(s)	105, 972
DpnII	GATC	2 cut(s)	103, 970
Eam1104I	CTCTTC	3 cut(s)	67, 575, 942
EarI	CTCTTC	3 cut(s)	67, 575, 942
Eco105I	TACGTA	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	735, 925
Eco31I	GGTCTC	2 cut(s)	206, 632
Eco32I	GATATC	1 cut(s)	940
Eco47I	GGWCC	1 cut(s)	1220
Eco57I	CTGAAG	1 cut(s)	1067
Eco88I	CYCGRG	3 cut(s)	323, 801, 1124
EcoRI	GAATTC	2 cut(s)	977, 1155
EcoRV	GATATC	1 cut(s)	940
EcoT38I	GRGCYC	2 cut(s)	735, 925
FaeI	CATG	9 cut(s)	272, 322, 426, 634, 771, 851, 977, 1007, 1278
FaqI	GGGAC	3 cut(s)	143, 300, 1117
FatI	CATG	9 cut(s)	268, 318, 422, 630, 767, 847, 973, 1003, 1274
FauI	CCCGC	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	970
Fnu4HI	GCNGC	2 cut(s)	525, 795
FokI	GGATG	2 cut(s)	363, 1191
FriOI	GRGCYC	2 cut(s)	735, 925
Fsp4HI	GCNGC	2 cut(s)	525, 795
FspBI	CTAG	5 cut(s)	1085, 1152, 1169, 1310, 1331
GluI	GCNGC	2 cut(s)	525, 795
GsaI	CCCAGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	865
HapII	CCGG	2 cut(s)	240, 926
Hin1II	CATG	9 cut(s)	272, 322, 426, 634, 771, 851, 977, 1007, 1278
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	2 cut(s)	89, 335
HinfI	GANTC	5 cut(s)	398, 1007, 1042, 1203, 1319
HpaII	CCGG	2 cut(s)	240, 926
HphI	GGTGA	5 cut(s)	62, 980, 1003, 1064, 1291
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	5 cut(s)	211, 403, 1047, 1197, 1211
Hpy188III	TCNNGA	9 cut(s)	30, 240, 341, 514, 778, 974, 1004, 1141, 1262
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	5 cut(s)	83, 237, 1042, 1052, 1094
HpyCH4III	ACNGT	2 cut(s)	22, 157
HpyCH4IV	ACGT	3 cut(s)	264, 666, 751
HpyCH4V	TGCA	3 cut(s)	851, 1257, 1340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	704, 713, 803
HpyF3I	CTNAG	2 cut(s)	210, 402
HpySE526I	ACGT	3 cut(s)	264, 666, 751
Hsp92II	CATG	9 cut(s)	272, 322, 426, 634, 771, 851, 977, 1007, 1278
Kpn2I	TCCGGA	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	2 cut(s)	103, 970
LmnI	GCTCC	2 cut(s)	928, 1067
LpnPI	CCDG	8 cut(s)	43, 175, 253, 384, 763, 801, 939, 1132
Lsp1109I	GCAGC	2 cut(s)	511, 781
LweI	GCATC	4 cut(s)	268, 679, 815, 1349
MaeI	CTAG	5 cut(s)	1085, 1152, 1169, 1310, 1331
MaeII	ACGT	3 cut(s)	264, 666, 751
MaeIII	GTNAC	6 cut(s)	16, 493, 667, 983, 1076, 1279
MalI	GATC	2 cut(s)	105, 972
MboI	GATC	2 cut(s)	103, 970
MboII	GAAGA	8 cut(s)	54, 91, 133, 430, 562, 959, 1067, 1151
MfeI	CAATTG	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	735, 925
MluCI	AATT	8 cut(s)	191, 310, 856, 977, 1019, 1155, 1266, 1325
MlyI	GAGTC	2 cut(s)	1036, 1212
MmeI	TCCRAC	2 cut(s)	870, 1198
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	4 cut(s)	42, 194, 333, 1023
MslI	CAYNNNNRTG	1 cut(s)	766
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	2 cut(s)	240, 926
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	1136
MwoI	GCNNNNNNNGC	3 cut(s)	704, 713, 803
NdeII	GATC	2 cut(s)	103, 970
NlaIII	CATG	9 cut(s)	272, 322, 426, 634, 771, 851, 977, 1007, 1278
NlaIV	GGNNCC	2 cut(s)	924, 1069
NmuCI	GTSAC	4 cut(s)	16, 983, 1076, 1279
NspI	RCATGY	2 cut(s)	771, 851
PaeR7I	CTCGAG	1 cut(s)	323
PagI	TCATGA	2 cut(s)	973, 1003
PciI	ACATGT	1 cut(s)	767
PctI	GAATGC	1 cut(s)	1136
PfeI	GAWTC	3 cut(s)	398, 1007, 1319
PkrI	GCNGC	2 cut(s)	526, 796
PleI	GAGTC	2 cut(s)	1036, 1211
PpsI	GAGTC	2 cut(s)	1036, 1211
Ppu21I	YACGTR	2 cut(s)	265, 752
PscI	ACATGT	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	924, 1069
PspPI	GGNCC	1 cut(s)	1220
PspXI	VCTCGAGB	1 cut(s)	323
RsaI	GTAC	6 cut(s)	227, 267, 369, 820, 1034, 1251
RsaNI	GTAC	6 cut(s)	226, 266, 368, 819, 1033, 1250
RseI	CAYNNNNRTG	1 cut(s)	766
SaqAI	TTAA	4 cut(s)	42, 194, 333, 1023
SatI	GCNGC	2 cut(s)	525, 795
Sau3AI	GATC	2 cut(s)	103, 970
Sau96I	GGNCC	1 cut(s)	1220
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	2 cut(s)	1036, 1212
SduI	GDGCHC	2 cut(s)	735, 925
SfaNI	GCATC	4 cut(s)	268, 679, 815, 1349
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	1220
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	5 cut(s)	303, 323, 332, 386, 512
SmoI	CTYRAG	5 cut(s)	303, 323, 332, 386, 512
SnaBI	TACGTA	1 cut(s)	265
Sse9I	AATT	8 cut(s)	191, 310, 856, 977, 1019, 1155, 1266, 1325
SsiI	CCGC	4 cut(s)	148, 281, 705, 1121
SspMI	CTAG	5 cut(s)	1085, 1152, 1169, 1310, 1331
TaaI	ACNGT	2 cut(s)	22, 157
TaiI	ACGT	3 cut(s)	267, 669, 754
TaqI	TCGA	5 cut(s)	102, 324, 340, 441, 648
TasI	AATT	8 cut(s)	191, 310, 856, 977, 1019, 1155, 1266, 1325
TatI	WGTACW	3 cut(s)	225, 1032, 1249
TfiI	GAWTC	3 cut(s)	398, 1007, 1319
Tru1I	TTAA	4 cut(s)	42, 194, 333, 1023
Tru9I	TTAA	4 cut(s)	42, 194, 333, 1023
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	4 cut(s)	16, 983, 1076, 1279
TseI	GCWGC	2 cut(s)	524, 794
Tsp45I	GTSAC	4 cut(s)	16, 983, 1076, 1279
TspDTI	ATGAA	4 cut(s)	887, 990, 992, 1020
TspRI	CASTG	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	1220
XapI	RAATTY	4 cut(s)	856, 977, 1019, 1155
XceI	RCATGY	2 cut(s)	771, 851
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	5 cut(s)	1085, 1152, 1169, 1310, 1331
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.