Rroxscaffold_4G00307480

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0025829
Physical Location & Seq
Forward (+)
28788598 .. 28789311
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307480.1

Sequence Viewer

Length: 564 bp
ATGATAGATGTTGGTTACAACCAATTCCACAGGCAATTACCAAGGTCATTGGCGAATTGTGCAATGCTTGAGCCTCTTGTTCTATCCAATAATGAGTTCAATGAAGATTTCCCCATCTGGTTGGGAATGCTCCGGGAATTGAAACTTTTGGCAAGGAACCATAATGAGTTCAATGGTGTGATCAAGAGTAGCACAAAAAATCTTTATTTTCCCGAGTTGCTCATTCTTGATCTGTCTCACAATAGTTTCAGAGGCGCCAATTTCATACATTTGAGAGCACTTCATATGAGGGAAACTCTTGACTCTGTGGAGGCCCATTGCCAAAGAAATGTGGGAATTCTAATGCCCCATCTCAACTGCCACCTTCAAGCACATGAAGAAAATGATTCAGGCTCTGGAGTTGAACTTGATTGGACATTTATGCTAGCTGGATTTGGAAGTGGGTTGGTGGTGGGAGTGGTTCTTGCAAACGAGGGAATCAAATGGAGGCGTAAGTTGTTTCTTGAGATAGTTGGGATGTTGATCAGACTAGCGAAAAGGATCAGAAGGCAGAGGAGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

187

Amino Acids

21.56

Weight (kDa)

8.93

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025829)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00307480 Rroxscaffold_4G00307650
rosa_rugosa Rorug01G0187900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 255
AgsI TTSAA 5 cut(s) 100, 142, 172, 368, 404
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 548
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 336
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 134
AsuNHI GCTAGC 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 212
BanI GGYRCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 280
BccI CCATC 2 cut(s) 122, 357
BclI TGATCA 2 cut(s) 180, 522
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 425, 530
BfoI RGCGCY 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 158, 256
BmrFI CCNGG 1 cut(s) 134
BmtI GCTAGC 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 89, 524
BpuMI CCSGG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 69, 316
Bse8I GATNNNNATC 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 522
BseJI GATNNNNATC 1 cut(s) 521
BseMI GCAATG 2 cut(s) 69, 316
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 4 cut(s) 180, 229, 522, 540
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 158, 256
BspOI GCTAGC 1 cut(s) 428
BspPI GGATC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 254
BsrDI GCAATG 2 cut(s) 69, 316
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 4 cut(s) 180, 229, 522, 540
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 426
BstF5I GGATG 1 cut(s) 522
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 183, 232, 525, 543
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 4 cut(s) 180, 229, 522, 540
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 426
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 313
CviAII CATG 1 cut(s) 374
CviJI RGCY 4 cut(s) 73, 314, 393, 428
CviKI_1 RGCY 4 cut(s) 73, 314, 393, 428
DinI GGCGCC 1 cut(s) 256
DpnI GATC 4 cut(s) 182, 231, 524, 542
DpnII GATC 4 cut(s) 180, 229, 522, 540
Eco130I CCWWGG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 377
FaiI YATR 6 cut(s) 162, 266, 285, 287, 375, 422
FatI CATG 1 cut(s) 373
FauNDI CATATG 1 cut(s) 285
FbaI TGATCA 2 cut(s) 180, 522
FokI GGATG 1 cut(s) 529
FspBI CTAG 2 cut(s) 425, 530
GlaI GCGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 314
HapII CCGG 1 cut(s) 133
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 3 cut(s) 302, 386, 477
HpaII CCGG 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 251, 527, 545
Hpy188III TCNNGA 6 cut(s) 184, 212, 227, 299, 396, 503
HpyAV CCTTC 2 cut(s) 374, 540
HpyCH4V TGCA 2 cut(s) 62, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 255
KasI GGCGCC 1 cut(s) 254
Ksp22I TGATCA 2 cut(s) 180, 522
Kzo9I GATC 4 cut(s) 180, 229, 522, 540
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 16, 103, 146, 375, 381, 414
MaeI CTAG 2 cut(s) 425, 530
MaeIII GTNAC 1 cut(s) 14
MalI GATC 4 cut(s) 182, 231, 524, 542
MboI GATC 4 cut(s) 180, 229, 522, 540
MboII GAAGA 2 cut(s) 116, 389
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 7 cut(s) 23, 35, 55, 137, 259, 336, 559
Mly113I GGCGCC 1 cut(s) 255
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 8 cut(s) 84, 245, 282, 304, 466, 480, 546, 549
MseI TTAA 1 cut(s) 562
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 59
NarI GGCGCC 1 cut(s) 255
NciI CCSGG 1 cut(s) 134
NdeI CATATG 1 cut(s) 285
NdeII GATC 4 cut(s) 180, 229, 522, 540
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 2 cut(s) 158, 256
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 386, 477
PfoI TCCNGGA 1 cut(s) 132
PleI GAGTC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 158, 256
PspPI GGNCC 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 395
SaqAI TTAA 1 cut(s) 562
Sau3AI GATC 4 cut(s) 180, 229, 522, 540
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 280
SetI ASST 3 cut(s) 47, 366, 430
SfoI GGCGCC 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 68, 503
SmoI CTYRAG 2 cut(s) 68, 503
Sse9I AATT 7 cut(s) 23, 35, 55, 137, 259, 336, 559
SspDI GGCGCC 1 cut(s) 254
SspMI CTAG 2 cut(s) 425, 530
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 41
TasI AATT 7 cut(s) 23, 35, 55, 137, 259, 336, 559
TfiI GAWTC 2 cut(s) 386, 477
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TspDTI ATGAA 4 cut(s) 117, 253, 272, 390
XapI RAATTY 1 cut(s) 336
XspI CTAG 2 cut(s) 425, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.