Rroxscaffold_4G00307650

receptor-like protein 12

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
29091795 .. 29092097
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307650.1

Sequence Viewer

Length: 303 bp
ATGTCTCCCACAACAATCTCACAGGTCATGTACCTAGTGGATCTCAACTCTTTACATTTGACATCACTTCATATGAGGGAAATCCCGGATTATGTGGAGATCCATTGCCAAAGAAATGTGGAAATCCTGAGGGCTTTAAGCTTCCAAAATCCAGAAGAAGTGGACTTGAAATTTGCTGGCAGGTTTAGGGAGTGGGTTGGTGGTGGGAGTATTCTAGCAGATGTTGCAATCGCAAGGTGGGATGAGTGGTTCATCGAGATTGTTGGCATACTGATCAGACTAGCGAAAAGGATGAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.68

Weight (kDa)

6.27

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025829)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00307480 Rroxscaffold_4G00307650
rosa_rugosa Rorug01G0187900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 48, 94
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 48, 94
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AsuC2I CCSGG 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 35, 215, 281
BfuAI ACCTGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 86
Bse21I CCTNAGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 103
BseGI GGATG 2 cut(s) 247, 297
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 40, 99, 273
BspCNI CTCAG 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 48, 94
BsrDI GCAATG 1 cut(s) 103
BssMI GATC 3 cut(s) 40, 99, 273
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 247, 297
BstKTI GATC 3 cut(s) 43, 102, 276
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 40, 99, 273
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 40, 99
BstYI RGATCY 2 cut(s) 40, 99
Bsu36I CCTNAGG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 247, 297
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 28
CviJI RGCY 2 cut(s) 134, 141
CviKI_1 RGCY 2 cut(s) 134, 141
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 42, 101, 275
DpnII GATC 3 cut(s) 40, 99, 273
Eco81I CCTNAGG 1 cut(s) 128
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 72, 74, 93, 269
FatI CATG 1 cut(s) 27
FauNDI CATATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 273
FokI GGATG 1 cut(s) 254
FspBI CTAG 3 cut(s) 35, 215, 281
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 139
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 3 cut(s) 127, 152, 256
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 3 cut(s) 40, 99, 273
LpnPI CCDG 6 cut(s) 8, 99, 140, 162, 165, 166
MaeI CTAG 3 cut(s) 35, 215, 281
MalI GATC 3 cut(s) 42, 101, 275
MboI GATC 3 cut(s) 40, 99, 273
MboII GAAGA 1 cut(s) 167
MflI RGATCY 2 cut(s) 40, 99
MluCI AATT 1 cut(s) 170
MnlI CCTC 2 cut(s) 69, 123
MseI TTAA 1 cut(s) 137
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 72
NdeII GATC 3 cut(s) 40, 99, 273
NlaIII CATG 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 84
PsuI RGATCY 2 cut(s) 40, 99
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 137
Sau3AI GATC 3 cut(s) 40, 99, 273
ScrFI CCNGG 1 cut(s) 86
SetI ASST 6 cut(s) 27, 36, 143, 185, 239, 302
Sse9I AATT 1 cut(s) 170
SspMI CTAG 3 cut(s) 35, 215, 281
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 170
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 59, 241
XapI RAATTY 1 cut(s) 170
XspI CTAG 3 cut(s) 35, 215, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.