Rorug01G0187900

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0025829
Physical Location & Seq
Reverse (-)
25980878 .. 25982484
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0187900.1

Sequence Viewer

Length: 1146 bp
ATGGGCATTGTGGAAGATGGAGATGAGGATGGGAATGATACTAGAACAGTGGTTGCTGATTTTGATGCTGATGTGGGGAAAAGTGTTGAGCTTGATTTCTTAATTAAGTTTTGGTTTCCTGCGGTTGTTGAGTACTGTTTGGAAGAGTTTCCTGAGGTAGTTTATCATTGTGGTCCAACCAATAGTGGGAAAACTTTCAATACTTTGCAACGGTTTATGGAAGCGAAGAAGGGTATATACTGCAGTCCTCTGAGATTATTAGCTATGGAAGTCTTTGACAAAGTAAATGCACTTGGGGTGTATTGTAGTCTTCACACCGGGCAAGAAAAGAAATTTGTCCCATTCTCAAACCATGCTGCTTGTACAGTGGAAATGGTGTCAACTAACGAAATGTATGATATTGCTGTCATTGATGAAATTCAGATGATGGCAGACCCATGTAGAGATACCGGTGATGAGTTGTATGAGAACCATTGTGAGAGGTTTAAGCCATTGGTGGTTGAAGCAAAAACTCTCTTGGGAGTTCTTAAGAATGTCAGGTCTGGAGGCTGTGTAGTTTCCTTTTCAAGGAGAGAGGTGTTTGAGGTTGAGCTATTTGCAGGGCAACTTTCTAATGTTACATTCTGCCAGCTTCATGACAAATTTGGCGAAAATTGCCGCCTAGATGGGTCATACTTCTTGTGTCGACATGATCATATAAATAAAGTTGCAAATATGTCACAGAAGGTTCAGGAGTTGTCTCTGGAGGATCGTTTTAACTTCTGTTTTGCCCCAGTAAATATCAGAGACCCAAAAGCTATGTTCCATCTTCTAAAGTTTGCTTCATCATATAGTCAGAACCTCCCTGTCAATATTGGTATGGGCATACCGACGGTTTCTGGTCGTAACAAGAAAGAACTCTTGGATCTTGAGACTAAGCATCAAGTGTTGTCTATGCATATGTGGTTGTCACACCACTTCAAGGAAGAAACTTTTCCTTATGTCAAGAAGGCTGAGGCAATGGCTACAGATATTGCTGAATTGTTGGGTCAGTCCCTGGCCAATGCTAACTGGAAATTAACCAGAATCAAGGCAGTATCAAAGCCTCGAAAGAAAGAAGATAGTTATGAGAGGCCATTGTCACGCATCAAACTGTTTCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

381

Amino Acids

43.42

Weight (kDa)

5.98

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEXQc_Suv3 PF22527 52 - 149 1.1e-40 DEXQ-box helicase domain of Suv3
Suv3_C_1 PF18147 236 - 278 1.2e-15 Suv3 C-terminal domain 1
SUV3_C PF12513 300 - 348 3.1e-09 ATP-dependent RNA helicase SUV3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025829)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00307480 Rroxscaffold_4G00307650
rosa_rugosa Rorug01G0187900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 685
AciI CCGC 2 cut(s) 122, 658
AclWI GGATC 2 cut(s) 756, 912
AcoI YGGCCR 1 cut(s) 1038
AcsI RAATTY 3 cut(s) 332, 417, 641
AfaI GTAC 2 cut(s) 134, 364
AfiI CCNNNNNNNGG 3 cut(s) 186, 567, 961
AflII CTTAAG 1 cut(s) 527
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 4 cut(s) 199, 503, 567, 961
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 5 cut(s) 91, 263, 592, 631, 797
AluI AGCT 5 cut(s) 91, 263, 592, 631, 797
Alw26I GTCTC 3 cut(s) 744, 780, 905
AlwI GGATC 2 cut(s) 756, 912
AlwNI CAGNNNCTG 1 cut(s) 1036
AoxI GGCC 2 cut(s) 1038, 1112
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 3 cut(s) 332, 417, 641
AsiGI ACCGGT 1 cut(s) 449
Asp700I GAANNNNTTC 3 cut(s) 147, 194, 972
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 464
AvaII GGWCC 1 cut(s) 173
AxyI CCTNAGG 1 cut(s) 153
BalI TGGCCA 1 cut(s) 1040
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 993
BbvI GCAGC 1 cut(s) 343
BccI CCATC 5 cut(s) 11, 23, 421, 659, 813
BciT130I CCWGG 1 cut(s) 1037
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 744, 780, 905
BfaI CTAG 2 cut(s) 42, 662
BfmI CTRYAG 2 cut(s) 241, 1005
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 2 cut(s) 357, 658
BlsI GCNGC 2 cut(s) 358, 659
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 319, 1037
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 319, 1037
BmrI ACTGGG 1 cut(s) 767
BmsI GCATC 3 cut(s) 55, 928, 1134
BmuI ACTGGG 1 cut(s) 767
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 2 cut(s) 564, 764
Bpu10I CCTNAGC 1 cut(s) 993
BpuEI CTTGAG 1 cut(s) 929
BpuMI CCSGG 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 780
BsaJI CCNNGG 1 cut(s) 1035
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 567, 961
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 773, 1055
Bse21I CCTNAGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 1 cut(s) 1035
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 186, 567, 961
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 3 cut(s) 144, 242, 984
BseNI ACTGG 2 cut(s) 773, 1055
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 2 cut(s) 1040, 1114
BshTI ACCGGT 1 cut(s) 449
BsiSI CCGG 2 cut(s) 318, 450
BslFI GGGAC 2 cut(s) 323, 1018
BslI CCNNNNNNNGG 3 cut(s) 186, 567, 961
BsmAI GTCTC 3 cut(s) 744, 780, 905
BsmFI GGGAC 2 cut(s) 323, 1018
BsnI GGCC 2 cut(s) 1040, 1114
Bso31I GGTCTC 1 cut(s) 780
Bsp1407I TGTACA 1 cut(s) 362
Bsp143I GATC 3 cut(s) 691, 748, 904
BspACI CCGC 2 cut(s) 122, 658
BspANI GGCC 2 cut(s) 1040, 1114
BspCNI CTCAG 3 cut(s) 145, 243, 985
BspHI TCATGA 1 cut(s) 634
BspMAI CTGCAG 1 cut(s) 245
BspPI GGATC 2 cut(s) 756, 912
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 780
BsrDI GCAATG 1 cut(s) 1005
BsrFI RCCGGY 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 362
BsrI ACTGG 2 cut(s) 773, 1055
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 1035
BssMI GATC 3 cut(s) 691, 748, 904
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 6 cut(s) 49, 137, 213, 367, 874, 1134
Bst6I CTCTTC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 4 cut(s) 153, 251, 915, 993
BstENI CCTNNNNNAGG 1 cut(s) 565
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 3 cut(s) 694, 751, 907
BstMAI GTCTC 3 cut(s) 744, 780, 905
BstMBI GATC 3 cut(s) 691, 748, 904
BstMWI GCNNNNNNNGC 1 cut(s) 654
BstNI CCWGG 1 cut(s) 1037
BstSCI CCNGG 2 cut(s) 317, 1035
BstSFI CTRYAG 2 cut(s) 241, 1005
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 2 cut(s) 1040, 1114
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 54, 372
Cac8I GCNNGC 1 cut(s) 629
CaiI CAGNNNCTG 1 cut(s) 1036
CciI TCATGA 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 133, 363
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 4 cut(s) 353, 438, 635, 689
CviQI GTAC 2 cut(s) 133, 363
DdeI CTNAG 4 cut(s) 153, 251, 915, 993
DpnI GATC 3 cut(s) 693, 750, 906
DpnII GATC 3 cut(s) 691, 748, 904
EaeI YGGCCR 1 cut(s) 1038
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 173
Eco81I CCTNAGG 1 cut(s) 153
EcoNI CCTNNNNNAGG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 1035
EcoT22I ATGCAT 1 cut(s) 939
FaeI CATG 4 cut(s) 356, 441, 638, 692
FaqI GGGAC 2 cut(s) 323, 1018
FatI CATG 4 cut(s) 352, 437, 634, 688
FauNDI CATATG 1 cut(s) 939
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 357, 658
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 357, 658
FspBI CTAG 2 cut(s) 42, 662
GluI GCNGC 2 cut(s) 357, 658
GsuI CTGGAG 2 cut(s) 564, 764
HaeIII GGCC 2 cut(s) 1040, 1114
HapII CCGG 2 cut(s) 318, 450
Hin1II CATG 4 cut(s) 356, 441, 638, 692
HincII GTYRAC 2 cut(s) 381, 686
HindII GTYRAC 2 cut(s) 381, 686
HinfI GANTC 1 cut(s) 1065
HpaII CCGG 2 cut(s) 318, 450
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 381, 686
Hpy188I TCNGA 5 cut(s) 252, 423, 785, 837, 1140
Hpy188III TCNNGA 7 cut(s) 152, 543, 635, 731, 743, 908, 985
Hpy8I GTNNAC 2 cut(s) 381, 686
Hpy99I CGWCG 1 cut(s) 874
HpyAV CCTTC 3 cut(s) 223, 718, 982
HpyCH4III ACNGT 6 cut(s) 49, 137, 213, 367, 874, 1134
HpyCH4V TGCA 6 cut(s) 208, 243, 290, 599, 710, 937
HpyF10VI GCNNNNNNNGC 1 cut(s) 654
HpyF3I CTNAG 4 cut(s) 153, 251, 915, 993
Hsp92II CATG 4 cut(s) 356, 441, 638, 692
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 3 cut(s) 691, 748, 904
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 3 cut(s) 55, 928, 1134
MaeI CTAG 2 cut(s) 42, 662
MaeIII GTNAC 5 cut(s) 616, 717, 884, 948, 1119
MalI GATC 3 cut(s) 693, 750, 906
MboI GATC 3 cut(s) 691, 748, 904
MboII GAAGA 7 cut(s) 26, 155, 238, 302, 800, 977, 1109
MflI RGATCY 1 cut(s) 904
MlsI TGGCCA 1 cut(s) 1040
MluCI AATT 7 cut(s) 102, 332, 417, 641, 652, 1019, 1055
MluNI TGGCCA 1 cut(s) 1040
MmeI TCCRAC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 1040
Mph1103I ATGCAT 1 cut(s) 939
MroXI GAANNNNTTC 3 cut(s) 147, 194, 972
MscI TGGCCA 1 cut(s) 1040
MseI TTAA 6 cut(s) 101, 105, 486, 528, 756, 1058
Msp20I TGGCCA 1 cut(s) 1040
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 2 cut(s) 318, 450
MspR9I CCNGG 2 cut(s) 319, 1037
MvaI CCWGG 1 cut(s) 1037
MwoI GCNNNNNNNGC 1 cut(s) 654
NciI CCSGG 1 cut(s) 319
NdeI CATATG 1 cut(s) 939
NdeII GATC 3 cut(s) 691, 748, 904
NlaIII CATG 4 cut(s) 356, 441, 638, 692
NmuCI GTSAC 3 cut(s) 717, 948, 1119
NsiI ATGCAT 1 cut(s) 939
PacI TTAATTAA 1 cut(s) 105
PagI TCATGA 1 cut(s) 634
PdmI GAANNNNTTC 3 cut(s) 147, 194, 972
PfeI GAWTC 1 cut(s) 1065
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 2 cut(s) 358, 659
Psp6I CCWGG 1 cut(s) 1035
PspGI CCWGG 1 cut(s) 1035
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 1 cut(s) 904
RsaI GTAC 2 cut(s) 134, 364
RsaNI GTAC 2 cut(s) 133, 363
SalI GTCGAC 1 cut(s) 684
SaqAI TTAA 6 cut(s) 101, 105, 486, 528, 756, 1058
SatI GCNGC 2 cut(s) 357, 658
Sau3AI GATC 3 cut(s) 691, 748, 904
Sau96I GGNCC 1 cut(s) 173
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 319, 1037
SfaNI GCATC 3 cut(s) 55, 928, 1134
SfcI CTRYAG 2 cut(s) 241, 1005
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 527, 908
SmoI CTYRAG 2 cut(s) 527, 908
Sse9I AATT 7 cut(s) 102, 332, 417, 641, 652, 1019, 1055
SsiI CCGC 2 cut(s) 122, 658
SspI AATATT 1 cut(s) 853
SspMI CTAG 2 cut(s) 42, 662
StyD4I CCNGG 2 cut(s) 317, 1035
TaaI ACNGT 6 cut(s) 49, 137, 213, 367, 874, 1134
TaqI TCGA 2 cut(s) 685, 1087
TasI AATT 7 cut(s) 102, 332, 417, 641, 652, 1019, 1055
TatI WGTACW 2 cut(s) 132, 362
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 1 cut(s) 1065
Tru1I TTAA 6 cut(s) 101, 105, 486, 528, 756, 1058
Tru9I TTAA 6 cut(s) 101, 105, 486, 528, 756, 1058
TscAI CASTG 2 cut(s) 54, 372
TseFI GTSAC 3 cut(s) 717, 948, 1119
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 3 cut(s) 717, 948, 1119
TspDTI ATGAA 3 cut(s) 429, 623, 813
TspRI CASTG 2 cut(s) 54, 372
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 565
XapI RAATTY 3 cut(s) 332, 417, 641
XmiI GTMKAC 1 cut(s) 685
XmnI GAANNNNTTC 3 cut(s) 147, 194, 972
XspI CTAG 2 cut(s) 42, 662
ZrmI AGTACT 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.