Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0025814

Physical Location & Seq

Genomic Coordinates Forward (+)

39714273 .. 39720280

Gene Structure 6008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAGAATCAACAAGCACTAAGCACACGTGCCGATTCATCCACTATCAAAGCAAATGAACACTCACCATGTGACATCACTCGTGGTTCAAATCCGATCAAGAGCAAACCTCAATCCCTTGATCAACCGCCTTCGCAAGTCATCAACAAAGTAAATCCTCTACAAGTTTTTCATCAAGCTCGTGGAGAATCAACAAGCACCAAACACATGTGCCGATTCATCCCCTACCAAAGCCGAAGAATGCTCACCATAGAAGGCCAAAGATTGAAAAAGGGTTCAGACATGTTTGATGACATAGACGATGAAAATGGTGAAGCTGCAAAAATGGGTAAGATTTTGGGAAATGATAAAGACAAGGAAAATAGCGAGAACTTAGCCAAGGGACTAGATGAAGGCAGTGAAGCAAAGAATTCCATACAAGAAAGTGCTAAATTGGAGAATGGAGAGAAAGATCAAGGTAAATCACATAATTTGTGCGAAGGAGGAAAAAAACTGAAGGTGAGCGTGCTCTCTCCCGACCGAACGCTACTAGCTTTTCCGCAGCTGCGTTCCGGCCGGGAGAGGATGGTGTTTCGAGTAGTGGAGGGATCTCAAGGCGGGGCGTGGCTTTGGGAGAGAGGATGGGTCGTCGTTTCCGTTTTGGGCGGATCAATTTCGATCTGTCTCTATCGGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

225

Amino Acids

24.91

Weight (kDa)

9.0

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025814)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00272610 Rroxscaffold_4G00315420
rosa_samantha	Rh1DG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	128, 539, 597, 645
AclWI	GGATC	2 cut(s)	595, 655
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	515
AcvI	CACGTG	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	71
AflIII	ACRYGT	3 cut(s)	26, 207, 282
AgsI	TTSAA	2 cut(s)	90, 268
AluBI	AGCT	4 cut(s)	179, 317, 533, 544
AluI	AGCT	4 cut(s)	179, 317, 533, 544
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	2 cut(s)	595, 655
AoxI	GGCC	2 cut(s)	256, 553
ApeKI	GCWGC	3 cut(s)	317, 541, 544
ApoI	RAATTY	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	4 cut(s)	57, 238, 323, 511
BauI	CACGAG	2 cut(s)	81, 180
BbrPI	CACGTG	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	3 cut(s)	304, 531, 553
BccI	CCATC	2 cut(s)	559, 615
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	3 cut(s)	386, 530, 676
BisI	GCNGC	3 cut(s)	318, 542, 545
BlsI	GCNGC	3 cut(s)	319, 543, 546
Bme1390I	CCNGG	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	557
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuEI	CTTGAG	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	4 cut(s)	38, 219, 570, 626
BseX3I	CGGCCG	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	304, 531, 553
Bsh1285I	CGRYCG	2 cut(s)	520, 556
BshFI	GGCC	2 cut(s)	258, 555
BsiEI	CGRYCG	2 cut(s)	520, 556
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	552, 556
BslFI	GGGAC	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	258, 555
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
BspACI	CCGC	4 cut(s)	128, 539, 597, 645
BspANI	GGCC	2 cut(s)	258, 555
BspPI	GGATC	2 cut(s)	595, 655
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
BssSI	CACGAG	2 cut(s)	81, 180
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	2 cut(s)	81, 180
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	20, 373
BstF5I	GGATG	4 cut(s)	38, 219, 570, 626
BstKTI	GATC	7 cut(s)	99, 124, 454, 590, 650, 660, 675
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
BstMCI	CGRYCG	2 cut(s)	520, 556
BstNSI	RCATGY	2 cut(s)	211, 286
BstSCI	CCNGG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	304, 531, 553
BstX2I	RGATCY	2 cut(s)	587, 672
BstYI	RGATCY	2 cut(s)	587, 672
BstZI	CGGCCG	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	258, 555
BtsCI	GGATG	4 cut(s)	38, 219, 570, 626
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	506
CviAII	CATG	3 cut(s)	69, 208, 283
CviJI	RGCY	9 cut(s)	179, 234, 258, 317, 377, 533, 544, 555, 607
CviKI_1	RGCY	9 cut(s)	179, 234, 258, 317, 377, 533, 544, 555, 607
DdeI	CTNAG	2 cut(s)	20, 373
DpnI	GATC	7 cut(s)	98, 123, 453, 589, 649, 659, 674
DpnII	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
DraIII	CACNNNGTG	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	553
EagI	CGGCCG	1 cut(s)	553
EciI	GGCGGA	1 cut(s)	660
EclXI	CGGCCG	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	378
Eco52I	CGGCCG	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	515
Eco72I	CACGTG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	72, 211, 286
FaiI	YATR	7 cut(s)	70, 209, 251, 284, 296, 416, 468
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	3 cut(s)	68, 207, 282
FauI	CCCGC	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	318, 542, 545
FokI	GGATG	4 cut(s)	25, 206, 577, 633
Fsp4HI	GCNGC	3 cut(s)	318, 542, 545
FspBI	CTAG	3 cut(s)	386, 530, 676
GluI	GCNGC	3 cut(s)	318, 542, 545
HaeIII	GGCC	2 cut(s)	258, 555
HapII	CCGG	2 cut(s)	552, 556
Hin1II	CATG	3 cut(s)	72, 211, 286
HinfI	GANTC	4 cut(s)	7, 35, 188, 216
HpaII	CCGG	2 cut(s)	552, 556
HphI	GGTGA	4 cut(s)	57, 238, 323, 511
Hpy188I	TCNGA	3 cut(s)	96, 280, 672
Hpy188III	TCNNGA	2 cut(s)	100, 515
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	5 cut(s)	141, 248, 386, 473, 490
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	20, 373
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	72, 211, 286
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
LpnPI	CCDG	2 cut(s)	565, 569
Lsp1109I	GCAGC	3 cut(s)	304, 531, 553
MaeI	CTAG	3 cut(s)	386, 530, 676
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	7 cut(s)	98, 123, 453, 589, 649, 659, 674
MboI	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
MboII	GAAGA	2 cut(s)	16, 249
MflI	RGATCY	2 cut(s)	587, 672
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	4 cut(s)	409, 431, 469, 651
MnlI	CCTC	6 cut(s)	120, 168, 476, 555, 577, 611
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	2 cut(s)	552, 556
MspR9I	CCNGG	1 cut(s)	557
Mva1269I	GAATGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
NlaIII	CATG	3 cut(s)	72, 211, 286
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	2 cut(s)	211, 286
PciI	ACATGT	2 cut(s)	207, 282
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	4 cut(s)	7, 35, 188, 216
PkrI	GCNGC	3 cut(s)	319, 543, 546
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
Ppu21I	YACGTR	1 cut(s)	29
PscI	ACATGT	2 cut(s)	207, 282
PspCI	CACGTG	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	587, 672
PvuII	CAGCTG	1 cut(s)	544
SatI	GCNGC	3 cut(s)	318, 542, 545
Sau3AI	GATC	7 cut(s)	96, 121, 451, 587, 647, 657, 672
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	8 cut(s)	31, 112, 181, 319, 460, 501, 535, 546
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	4 cut(s)	409, 431, 469, 651
SsiI	CCGC	4 cut(s)	128, 539, 597, 645
SspMI	CTAG	3 cut(s)	386, 530, 676
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	574, 656
TaqII	GACCGA	1 cut(s)	534
TasI	AATT	4 cut(s)	409, 431, 469, 651
TfiI	GAWTC	4 cut(s)	7, 35, 188, 216
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	3 cut(s)	317, 541, 544
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	7 cut(s)	17, 27, 72, 161, 208, 318, 405
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	211, 286
XspI	CTAG	3 cut(s)	386, 530, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.