Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0025814

Physical Location & Seq

Genomic Coordinates Reverse (-)

32268124 .. 32276726

Gene Structure 8603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAAATAAAATCAGGAGAAGGCCAAAAATTGAGAAAGGGTTCAGACATGTTTGATGACATAGACGATGAAAATGGTGAAGCCGCAAAAATGGATAATATTTTGGGAAATGATAAAGACAAGGAAAATAGCGAGAACTCAGCCAAAGGACTAGATGAAGGTAGTGAAGCAAAGAATTCCATACAGGAAAATGATAAATTGGAGAATGGAGAGAAAGACAAAATGAAGGATGATGTCACTGCTTGTATATATGGATGTCTTGGGAAAGAAGCCACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

93

Amino Acids

10.12

Weight (kDa)

4.47

Isoelectric Point (pI)

21.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025814)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00272610 Rroxscaffold_4G00315420
rosa_samantha	Rh1DG155000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	48
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AoxI	GGCC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	89
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BseGI	GGATG	2 cut(s)	235, 260
BseMII	CTCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	235, 260
BstNSI	RCATGY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	235, 260
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	5 cut(s)	24, 83, 143, 272, 278
CviKI_1	RGCY	5 cut(s)	24, 83, 143, 272, 278
DdeI	CTNAG	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	52
FaiI	YATR	6 cut(s)	50, 62, 182, 248, 250, 252
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	242, 267
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	14, 152, 220
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	52
LpnPI	CCDG	1 cut(s)	170
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	235
MluCI	AATT	3 cut(s)	29, 175, 197
MroXI	GAANNNNTTC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	85
PscI	ACATGT	1 cut(s)	48
SatI	GCNGC	1 cut(s)	84
SetI	ASST	2 cut(s)	163, 280
SgeI	CNNG	8 cut(s)	27, 61, 133, 145, 164, 197, 255, 272
Sse9I	AATT	3 cut(s)	29, 175, 197
SsiI	CCGC	1 cut(s)	84
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	152
TasI	AATT	3 cut(s)	29, 175, 197
TauI	GCSGC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	17, 84, 171, 239
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.