Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0021283

Physical Location & Seq

Genomic Coordinates Reverse (-)

53496396 .. 53496967

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATACCTTCTTCTTTGGTTTCTCTTAGAGGTCTTCGATATCTAGATCTTTCGGGGAATAACTTGTCAAGCCAAATTCCAAAAGATCTATGGAGACTTCCATTCTTGGTATATTTGAACCTTTCGTTCAATAATCTTGAGGGTGAGGTTTCATACCGGACACTTCATCAAGCTACTAGCAGATTCTCTCCGAGCAATCAAATTAGGTCAGGCGGTTTTGGCTCTATAGACAAAGGGATTCTTGATCAAGAAGAAAACAATGTTGTTGCCAATAAGGTCCTCAACCTTCAACAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

9.22

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	4 - 46	4.1e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021283)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01360
rosa_chinensis	RchiOBHm_Chr1g0316141 RchiOBHm_Chr2g0156401
rosa_roxburghii	Rroxscaffold_4G00322880
rosa_rugosa	Rorug03G0166600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	118, 130, 290
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	44, 177
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	2 cut(s)	46, 85
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	46, 85, 244
BspACI	CCGC	1 cut(s)	213
BssMI	GATC	3 cut(s)	46, 85, 244
BstDEI	CTNAG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	49, 88, 247
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	46, 85, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	2 cut(s)	46, 85
BstYI	RGATCY	2 cut(s)	46, 85
Cfr13I	GGNCC	1 cut(s)	277
CviJI	RGCY	3 cut(s)	72, 173, 222
CviKI_1	RGCY	3 cut(s)	72, 173, 222
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	48, 87, 246
DpnII	GATC	3 cut(s)	46, 85, 244
Eco32I	GATATC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	41
FaiI	YATR	4 cut(s)	91, 112, 154, 227
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FbaI	TGATCA	1 cut(s)	244
FspBI	CTAG	2 cut(s)	44, 177
HapII	CCGG	1 cut(s)	157
HinfI	GANTC	2 cut(s)	183, 238
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	4 cut(s)	44, 137, 242, 248
HpyAV	CCTTC	2 cut(s)	18, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	46, 85, 244
LpnPI	CCDG	2 cut(s)	170, 195
MaeI	CTAG	2 cut(s)	44, 177
MalI	GATC	3 cut(s)	48, 87, 246
MboI	GATC	3 cut(s)	46, 85, 244
MboII	GAAGA	3 cut(s)	3, 26, 263
MflI	RGATCY	2 cut(s)	46, 85
MluCI	AATT	2 cut(s)	75, 201
MnlI	CCTC	4 cut(s)	23, 133, 139, 290
MspI	CCGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	3 cut(s)	46, 85, 244
PfeI	GAWTC	2 cut(s)	183, 238
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	46, 85
Sau3AI	GATC	3 cut(s)	46, 85, 244
Sau96I	GGNCC	1 cut(s)	277
SetI	ASST	8 cut(s)	10, 34, 123, 150, 175, 209, 279, 288
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	75, 201
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	2 cut(s)	44, 177
TaqI	TCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	75, 201
TfiI	GAWTC	2 cut(s)	183, 238
TspDTI	ATGAA	2 cut(s)	141, 155
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XspI	CTAG	2 cut(s)	44, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.