Rorug03G0166600

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0021283
Physical Location & Seq
Forward (+)
13891544 .. 13909811
18268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0166600.1

Sequence Viewer

Length: 1449 bp
ATGGAGGCCAATCACCCAAAGCCTCATGCAATCATGGTACCTCTTTCTCTCCAAGGCCATGTCAACCCCTTCACCCAGCTGGCCATGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACATTCATCACCAGATAACCAGATCCAAACCCAAGAACAACACTACACAAGAGCAAGATCAAGATCACATCTTTGCGGCGGCGCTTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGTGATGCTTTCCCACTGTCCTTCAATCGGTTTCAGAACCTTGACCAATTTCTTGAGGGCAGTATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTAGTACAATCTGACCCCTCAATCAGTTGTTTGATTGCTGACACCTTCTACACATGGCCGGTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTCTTGAACATTTACTACCACTTGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGACTTGATGTCACACCTATACATTACTGATACCTCAGCTCCGATGCTGCGAATCGTTAAGAAGGCGTTCCGCGAAGTTAAAAGGGCAGATTTTATACTGTGTAATACAGTTCAAGAACTTGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCAGTGAATCCACCAAGAATGTTGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAAACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGCTATTGTCAGGTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAATTTCATTTGGGTACTACGCCCTGACACTATAAGCTATGACGAAGAAAGGTATGTTGTTCCCTTTGGATTGGAAGACCAGAGCGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGGTTGAGGTGCTTTCAAATCCAGCAATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCTATTGAAACTGACCAAATCACTAGTAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGACAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGAGTGCAAATTTGGGTGATCGAATACTGCGGAAGGAGATCAAGAAGGCAAAGCAGACATTGGAGGATGCTTTGGCTGCAGATGGGTCATCACAACAGAGTTTCTGCCGATTTATTAGTGACGTAAAGGCTAAAATTCAAACACGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

482

Amino Acids

54.63

Weight (kDa)

5.55

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 287 - 408 1.6e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021283)

Species Orthologous Gene IDs
pyrus_communis pycom14g01360
rosa_chinensis RchiOBHm_Chr1g0316141 RchiOBHm_Chr2g0156401
rosa_roxburghii Rroxscaffold_4G00322880
rosa_rugosa Rorug03G0166600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 2 cut(s) 37, 1054
AccII CGCG 1 cut(s) 666
AciI CCGC 4 cut(s) 209, 212, 664, 1327
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 81, 413
AcsI RAATTY 4 cut(s) 955, 1126, 1306, 1431
AfaI GTAC 5 cut(s) 39, 363, 437, 835, 969
AfiI CCNNNNNNNGG 2 cut(s) 279, 1097
AgsI TTSAA 8 cut(s) 277, 484, 587, 707, 716, 1086, 1181, 1436
AhdI GACNNNNNGTC 1 cut(s) 601
AhlI ACTAGT 2 cut(s) 1196, 1207
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 6 cut(s) 79, 473, 632, 891, 929, 990
AluI AGCT 6 cut(s) 79, 473, 632, 891, 929, 990
Alw26I GTCTC 2 cut(s) 729, 1238
AlwI GGATC 1 cut(s) 150
AoxI GGCC 6 cut(s) 6, 55, 81, 226, 413, 766
ApeKI GCWGC 2 cut(s) 640, 1373
ApoI RAATTY 4 cut(s) 955, 1126, 1306, 1431
Asp700I GAANNNNTTC 1 cut(s) 659
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 502, 767
AsuHPI GGTGA 6 cut(s) 5, 64, 100, 134, 430, 1325
AvaII GGWCC 1 cut(s) 502
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 37, 1054
BbsI GAAGAC 3 cut(s) 316, 766, 1035
BbvCI CCTCAGC 1 cut(s) 628
BbvI GCAGC 2 cut(s) 627, 1360
BccI CCATC 3 cut(s) 119, 1116, 1373
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 2 cut(s) 729, 1238
BcuI ACTAGT 2 cut(s) 1196, 1207
BfaI CTAG 2 cut(s) 1197, 1208
BfmI CTRYAG 2 cut(s) 241, 1374
BfoI RGCGCY 1 cut(s) 218
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 4 cut(s) 210, 213, 641, 1374
BlsI GCNGC 4 cut(s) 211, 214, 642, 1375
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 502
BmeRI GACNNNNNGTC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 502, 767
BmiI GGNNCC 2 cut(s) 39, 1056
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 4 cut(s) 104, 247, 627, 1354
BmuI ACTGGG 1 cut(s) 774
BpiI GAAGAC 3 cut(s) 316, 766, 1035
Bpu10I CCTNAGC 2 cut(s) 628, 930
BpuEI CTTGAG 3 cut(s) 239, 326, 843
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 2 cut(s) 52, 1058
BsaXI ACNNNNNCTCC 6 cut(s) 345, 375, 616, 646, 1216, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 1097
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 2 cut(s) 780, 1140
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 52, 1058
BseGI GGATG 2 cut(s) 1127, 1369
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 279, 1097
BseMII CTCAG 3 cut(s) 642, 944, 1082
BseNI ACTGG 2 cut(s) 780, 1140
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 627, 1360
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 666
BshFI GGCC 6 cut(s) 8, 57, 83, 228, 415, 768
BshNI GGYRCC 2 cut(s) 37, 1054
BsiSI CCGG 2 cut(s) 225, 416
BslI CCNNNNNNNGG 2 cut(s) 279, 1097
BsmAI GTCTC 2 cut(s) 729, 1238
BsnI GGCC 6 cut(s) 8, 57, 83, 228, 415, 768
Bso31I GGTCTC 1 cut(s) 1238
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 5 cut(s) 155, 190, 196, 1315, 1335
BspACI CCGC 4 cut(s) 209, 212, 664, 1327
BspANI GGCC 6 cut(s) 8, 57, 83, 228, 415, 768
BspCNI CTCAG 3 cut(s) 641, 943, 1081
BspFNI CGCG 1 cut(s) 666
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 39, 1056
BspMAI CTGCAG 1 cut(s) 1378
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 2 cut(s) 37, 1054
BspTNI GGTCTC 1 cut(s) 1238
BsrFI RCCGGY 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 833
BsrI ACTGG 2 cut(s) 780, 1140
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 52, 1058
BssMI GATC 5 cut(s) 155, 190, 196, 1315, 1335
BssT1I CCWWGG 2 cut(s) 52, 1058
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 6 cut(s) 250, 270, 693, 703, 833, 1292
BstAUI TGTACA 1 cut(s) 833
BstC8I GCNNGC 2 cut(s) 81, 579
BstDEI CTNAG 5 cut(s) 628, 906, 930, 944, 1068
BstF5I GGATG 2 cut(s) 1127, 1369
BstFNI CGCG 1 cut(s) 666
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 5 cut(s) 158, 193, 199, 1318, 1338
BstMAI GTCTC 2 cut(s) 729, 1238
BstMBI GATC 5 cut(s) 155, 190, 196, 1315, 1335
BstMWI GCNNNNNNNGC 2 cut(s) 745, 1373
BstNI CCWGG 1 cut(s) 570
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 2 cut(s) 241, 1374
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 2 cut(s) 627, 1360
BstV2I GAAGAC 3 cut(s) 316, 766, 1035
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 6 cut(s) 8, 57, 83, 228, 415, 768
BtsCI GGATG 2 cut(s) 1127, 1369
BtsIMutI CAGTG 3 cut(s) 255, 266, 787
Cac8I GCNNGC 2 cut(s) 81, 579
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 502, 767
CsiI ACCWGGT 1 cut(s) 568
Csp6I GTAC 5 cut(s) 38, 362, 436, 834, 968
CviAII CATG 9 cut(s) 26, 34, 59, 85, 320, 335, 411, 518, 536
CviQI GTAC 5 cut(s) 38, 362, 436, 834, 968
DdeI CTNAG 5 cut(s) 628, 906, 930, 944, 1068
DpnI GATC 5 cut(s) 157, 192, 198, 1317, 1337
DpnII GATC 5 cut(s) 155, 190, 196, 1315, 1335
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 2 cut(s) 81, 413
Eam1105I GACNNNNNGTC 1 cut(s) 601
Eco130I CCWWGG 2 cut(s) 52, 1058
Eco31I GGTCTC 1 cut(s) 1238
Eco47I GGWCC 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 1126
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 52, 1058
ErhI CCWWGG 2 cut(s) 52, 1058
FaeI CATG 9 cut(s) 29, 37, 62, 88, 323, 338, 414, 521, 539
FatI CATG 9 cut(s) 25, 33, 58, 84, 319, 334, 410, 517, 535
FauNDI CATATG 1 cut(s) 757
Fnu4HI GCNGC 4 cut(s) 210, 213, 641, 1374
FokI GGATG 2 cut(s) 1134, 1376
Fsp4HI GCNGC 4 cut(s) 210, 213, 641, 1374
FspBI CTAG 2 cut(s) 1197, 1208
GlaI GCGC 1 cut(s) 216
GluI GCNGC 4 cut(s) 210, 213, 641, 1374
GsaI CCCAGC 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 6 cut(s) 8, 57, 83, 228, 415, 768
HapII CCGG 2 cut(s) 225, 416
HhaI GCGC 1 cut(s) 217
Hin1II CATG 9 cut(s) 29, 37, 62, 88, 323, 338, 414, 521, 539
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 3 cut(s) 64, 124, 1288
HindII GTYRAC 3 cut(s) 64, 124, 1288
HinfI GANTC 4 cut(s) 221, 645, 722, 785
HpaII CCGG 2 cut(s) 225, 416
HphI GGTGA 6 cut(s) 5, 64, 100, 134, 430, 1325
Hpy166II GTNNAC 4 cut(s) 64, 124, 836, 1288
Hpy188I TCNGA 6 cut(s) 288, 370, 636, 816, 823, 1296
Hpy188III TCNNGA 7 cut(s) 194, 305, 460, 481, 536, 707, 1339
Hpy8I GTNNAC 4 cut(s) 64, 124, 836, 1288
HpyAV CCTTC 8 cut(s) 79, 283, 412, 466, 649, 1276, 1324, 1336
HpyCH4III ACNGT 6 cut(s) 250, 270, 693, 703, 833, 1292
HpyCH4IV ACGT 1 cut(s) 1419
HpyCH4V TGCA 7 cut(s) 29, 95, 577, 739, 761, 1304, 1376
HpyF10VI GCNNNNNNNGC 2 cut(s) 745, 1373
HpyF3I CTNAG 5 cut(s) 628, 906, 930, 944, 1068
HpySE526I ACGT 1 cut(s) 1419
Hsp92II CATG 9 cut(s) 29, 37, 62, 88, 323, 338, 414, 521, 539
HspAI GCGC 1 cut(s) 215
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 5 cut(s) 155, 190, 196, 1315, 1335
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 2 cut(s) 627, 1360
LweI GCATC 4 cut(s) 104, 247, 627, 1354
MabI ACCWGGT 1 cut(s) 568
MaeI CTAG 2 cut(s) 1197, 1208
MaeII ACGT 1 cut(s) 1419
MaeIII GTNAC 4 cut(s) 603, 901, 1244, 1415
MalI GATC 5 cut(s) 157, 192, 198, 1317, 1337
MboI GATC 5 cut(s) 155, 190, 196, 1315, 1335
MboII GAAGA 4 cut(s) 316, 766, 1010, 1040
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 7 cut(s) 299, 541, 762, 955, 1126, 1306, 1431
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 2 cut(s) 230, 731
MmeI TCCRAC 2 cut(s) 331, 1248
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 659
MscI TGGCCA 1 cut(s) 83
MseI TTAA 4 cut(s) 651, 672, 1049, 1109
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 2 cut(s) 225, 416
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 1 cut(s) 666
MwoI GCNNNNNNNGC 2 cut(s) 745, 1373
NdeI CATATG 1 cut(s) 757
NdeII GATC 5 cut(s) 155, 190, 196, 1315, 1335
NlaIII CATG 9 cut(s) 29, 37, 62, 88, 323, 338, 414, 521, 539
NlaIV GGNNCC 2 cut(s) 39, 1056
NmuCI GTSAC 3 cut(s) 603, 1244, 1415
PagI TCATGA 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 645, 785
PkrI GCNGC 4 cut(s) 211, 214, 642, 1375
PleI GAGTC 2 cut(s) 229, 730
PpsI GAGTC 2 cut(s) 229, 730
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 39, 1056
PspPI GGNCC 2 cut(s) 502, 767
PsrI GAACNNNNNNTAC 2 cut(s) 476, 508
PstI CTGCAG 1 cut(s) 1378
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 5 cut(s) 39, 363, 437, 835, 969
RsaNI GTAC 5 cut(s) 38, 362, 436, 834, 968
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 4 cut(s) 651, 672, 1049, 1109
SatI GCNGC 4 cut(s) 210, 213, 641, 1374
Sau3AI GATC 5 cut(s) 155, 190, 196, 1315, 1335
Sau96I GGNCC 2 cut(s) 502, 767
SchI GAGTC 2 cut(s) 230, 731
ScrFI CCNGG 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 568
SfaNI GCATC 4 cut(s) 104, 247, 627, 1354
SfcI CTRYAG 2 cut(s) 241, 1374
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 218, 305, 858
SmoI CTYRAG 3 cut(s) 218, 305, 858
SpeI ACTAGT 2 cut(s) 1196, 1207
Sse9I AATT 7 cut(s) 299, 541, 762, 955, 1126, 1306, 1431
SsiI CCGC 4 cut(s) 209, 212, 664, 1327
SspMI CTAG 2 cut(s) 1197, 1208
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 52, 1058
TaaI ACNGT 6 cut(s) 250, 270, 693, 703, 833, 1292
TaiI ACGT 1 cut(s) 1422
TaqI TCGA 1 cut(s) 1318
TasI AATT 7 cut(s) 299, 541, 762, 955, 1126, 1306, 1431
TatI WGTACW 3 cut(s) 361, 435, 833
TauI GCSGC 2 cut(s) 212, 215
TfiI GAWTC 2 cut(s) 645, 785
Tru1I TTAA 4 cut(s) 651, 672, 1049, 1109
Tru9I TTAA 4 cut(s) 651, 672, 1049, 1109
TscAI CASTG 3 cut(s) 255, 273, 787
TseFI GTSAC 3 cut(s) 603, 1244, 1415
TseI GCWGC 2 cut(s) 640, 1373
Tsp45I GTSAC 3 cut(s) 603, 1244, 1415
TspDTI ATGAA 5 cut(s) 101, 128, 357, 870, 949
TspRI CASTG 3 cut(s) 255, 273, 787
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 4 cut(s) 955, 1126, 1306, 1431
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 2 cut(s) 1197, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.