Rroxscaffold_4G00324600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0023031
Physical Location & Seq
Reverse (-)
56119708 .. 56124310
4603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324600.1

Sequence Viewer

Length: 423 bp
ATGGCACCAACCTCCCATGGAACACTTGACAAGACCCGAAGAGTCCCTTCTTGCTTACGAGTTGGGGAACTAGTATGGATATGGCGTTCAACAAGGTCATCACTCATACTTGGCGGCATCACACTTAAACTCCCCAACCTAGAAGCTCCTCTTACTGCGGGACTTGGGGGACTTGATGAGAGGATCCATGATATCCCCACACTTGTATACTACAAAGGCTACTTGGCCTCACTCATAGTGAACTCTCTAAGTGGACATAGCCTTGCCTCAAGGGCAAGGTCGCTTTCCGGTCGAGATGAAGGTCCGGTGGCCACCTACGATTCAGCTCTAGCCGAAGAAAGATTGGCGCAAAATGACATAGACTTTAGAGATGACGAGGGGGTAGATGGAGGGGAGTGGTGTGGGAAGGAGAGGGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.26

Weight (kDa)

5.35

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023031)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000117.1_g000024
rosa_roxburghii Rroxscaffold_4G00324600 Rroxscaffold_5G00338620 Rroxscaffold_5G00382600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 207
AciI CCGC 2 cut(s) 114, 158
AclWI GGATC 2 cut(s) 178, 191
AcoI YGGCCR 1 cut(s) 309
AgsI TTSAA 1 cut(s) 90
AhlI ACTAGT 1 cut(s) 70
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 2 cut(s) 146, 326
AluI AGCT 2 cut(s) 146, 326
AlwI GGATC 2 cut(s) 178, 191
AoxI GGCC 2 cut(s) 225, 309
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 380
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 3 cut(s) 71, 140, 329
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 6, 185
BmsI GCATC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 16
BsaWI WCCGGW 2 cut(s) 287, 304
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
BseDI CCNNGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 227, 311
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 288, 305
BslFI GGGAC 3 cut(s) 29, 174, 183
BsmFI GGGAC 3 cut(s) 29, 174, 183
BsnI GGCC 2 cut(s) 227, 311
Bsp143I GATC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 2 cut(s) 114, 158
BspANI GGCC 2 cut(s) 227, 311
BspLI GGNNCC 2 cut(s) 6, 185
BspPI GGATC 2 cut(s) 178, 191
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 183
BssNAI GTATAC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BstZ17I GTATAC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 227, 311
BtgI CCRYGG 1 cut(s) 16
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 302
CviAII CATG 2 cut(s) 17, 188
CviJI RGCY 7 cut(s) 146, 219, 227, 261, 311, 326, 332
CviKI_1 RGCY 7 cut(s) 146, 219, 227, 261, 311, 326, 332
DdeI CTNAG 1 cut(s) 248
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 16
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 302
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 2 cut(s) 20, 191
FaiI YATR 9 cut(s) 18, 76, 82, 107, 189, 208, 236, 258, 359
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 135, 167
FaqI GGGAC 3 cut(s) 29, 174, 183
FatI CATG 2 cut(s) 16, 187
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 3 cut(s) 71, 140, 329
GlaI GCGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 2 cut(s) 227, 311
HapII CCGG 2 cut(s) 288, 305
HhaI GCGC 1 cut(s) 349
Hin1II CATG 2 cut(s) 20, 191
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 2 cut(s) 42, 320
HpaII CCGG 2 cut(s) 288, 305
Hpy166II GTNNAC 3 cut(s) 208, 241, 254
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 3 cut(s) 208, 241, 254
HpyAV CCTTC 3 cut(s) 57, 293, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 2 cut(s) 20, 191
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 301, 318
LweI GCATC 1 cut(s) 126
MaeI CTAG 3 cut(s) 71, 140, 329
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 51, 347
MflI RGATCY 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 8 cut(s) 22, 159, 174, 238, 277, 370, 383, 405
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
MseI TTAA 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 2 cut(s) 288, 305
MwoI GCNNNNNNNGC 1 cut(s) 272
NcoI CCATGG 1 cut(s) 16
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 20, 191
NlaIV GGNNCC 2 cut(s) 6, 185
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 6, 185
PspPI GGNCC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 183
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 51
SetI ASST 8 cut(s) 14, 98, 141, 148, 281, 304, 317, 328
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 1 cut(s) 418
SsiI CCGC 2 cut(s) 114, 158
SspMI CTAG 3 cut(s) 71, 140, 329
StyI CCWWGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 418
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 3 cut(s) 71, 140, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.