Rroxscaffold_5G00382600

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
62457830 .. 62479690
21861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382600.1

Sequence Viewer

Length: 240 bp
ATGATGAGGCTCCCGTGGCACCAACCTCCCATAGAACACTTCACAAGACCTGAAGAGTCCCTTCTTGCTAATGGAGTTCGGGGACTAGTATGGATATGGCGTTCAACAAGGTCATCACTCATACTTGGCGGCATCATATTTAAACTCCCCGACCAAGAAGTGTCTCTTACTCGGGGACTTGGGGGACTTCCATCAAAACTAGGACAAGTTTTTTGGATTCACGATTACTATTTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.11

Weight (kDa)

9.51

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023031)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 105
AhlI ACTAGT 1 cut(s) 85
AloI GAACNNNNNNTCC 2 cut(s) 85, 117
Alw26I GTCTC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AvaI CYCGRG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 18
BccI CCATC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 168
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 3 cut(s) 86, 200, 238
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 11, 20
BmsI GCATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 171
BslFI GGGAC 4 cut(s) 43, 96, 189, 198
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 4 cut(s) 43, 96, 189, 198
BsoBI CYCGRG 1 cut(s) 171
BspACI CCGC 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 11, 20
BspT107I GGYRCC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 14
CviJI RGCY 1 cut(s) 10
CviKI_1 RGCY 1 cut(s) 10
DraI TTTAAA 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 171
FaiI YATR 5 cut(s) 32, 91, 97, 122, 137
FalI AAGNNNNNCTT 4 cut(s) 45, 77, 150, 182
FaqI GGGAC 4 cut(s) 43, 96, 189, 198
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 3 cut(s) 86, 200, 238
GluI GCNGC 1 cut(s) 130
HinfI GANTC 2 cut(s) 56, 217
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 63
LweI GCATC 1 cut(s) 141
MaeI CTAG 3 cut(s) 86, 200, 238
MboII GAAGA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 1 cut(s) 36
MseI TTAA 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 11, 20
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 11, 20
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 130
SchI GAGTC 1 cut(s) 65
SetI ASST 3 cut(s) 28, 52, 113
SfaNI GCATC 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 85
SsiI CCGC 1 cut(s) 129
SspMI CTAG 3 cut(s) 86, 200, 238
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
XspI CTAG 3 cut(s) 86, 200, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.