Rroxscaffold_4G00325370

ATP binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
57081897 .. 57082376
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325370.1

Sequence Viewer

Length: 174 bp
ATGAGACGTGATGTAGCAAAGAAGAAGTCACAGACTTATTCATGCAAGGAACATAGCGACTGTGTGGATCGTATCATCAATGGTACTTCATCTGGAGGTTACACTTGCCGGTGCACGACAGGCTACGATGAGAACCCATGCATCTCAGATGGTTGCCAAGGTATAACTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

57

Amino Acids

6.24

Weight (kDa)

7.57

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022603)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0324581
rosa_laevigata RLG00000030188
rosa_roxburghii Rroxscaffold_4G00325370
rosa_wichuraiana Rw1G005310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 75
AfaI GTAC 1 cut(s) 85
AjiI CACGTC 1 cut(s) 8
Alw21I GWGCWC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
BaeGI GKGCMC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 8
BmsI GCATC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 158
BspPI GGATC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 62, 169
BstDEI CTNAG 1 cut(s) 145
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 116
BtrI CACGTC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 108
Csp6I GTAC 1 cut(s) 84
CviAII CATG 2 cut(s) 42, 138
CviJI RGCY 1 cut(s) 123
CviKI_1 RGCY 1 cut(s) 123
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 145
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 45, 141
FaiI YATR 5 cut(s) 43, 54, 139, 164, 172
FatI CATG 2 cut(s) 41, 137
GsuI CTGGAG 1 cut(s) 114
HapII CCGG 1 cut(s) 109
Hin1II CATG 2 cut(s) 45, 141
HpaII CCGG 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 62, 169
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 45, 114, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 2 cut(s) 45, 141
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 3 cut(s) 78, 105, 122
LweI GCATC 1 cut(s) 150
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 27, 98
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 143
MspI CCGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 45, 141
NmuCI GTSAC 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 143
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 116
SetI ASST 3 cut(s) 10, 100, 163
SfaNI GCATC 1 cut(s) 150
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 62, 169
TaiI ACGT 1 cut(s) 10
TseFI GTSAC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 30, 78
VneI GTGCAC 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.