Rroxscaffold_4G00325570

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0025751
Physical Location & Seq
Forward (+)
57301474 .. 57303441
1968 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00325570.1

Sequence Viewer

Length: 255 bp
ATGGTGCCGTGTTTAAAGGAACAATTTCTATGGATTTACTTGTTGCTTGTGAAGATCCTCAACAATTCAAATGAAAAGGGGGAAGATTTTATAAATGAAGTGGGAACAATGGGTCGAATTCACCATATAAATGTGGTTCGTATGGTTGGCTTCTGTGCTGATGGATATATTCAAGCTCTTGTTTACGAGTTCTTACCAAATGGTTACGTAATACCCGAAAATTCAAATTATTTTCCGAGAACATTTTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

84

Amino Acids

9.86

Weight (kDa)

6.04

Isoelectric Point (pI)

21.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 16 - 68 1.8e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025751)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_159G00432750 Rroxscaffold_4G00325570 Rroxscaffold_4G00325580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 2 cut(s) 117, 220
AgsI TTSAA 3 cut(s) 69, 173, 225
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwI GGATC 1 cut(s) 49
ApoI RAATTY 2 cut(s) 117, 220
Asp700I GAANNNNTTC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 113
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 4
Bsp143I GATC 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 208
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstSNI TACGTA 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
CviJI RGCY 2 cut(s) 150, 176
CviKI_1 RGCY 2 cut(s) 150, 176
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DraI TTTAAA 1 cut(s) 15
Eco105I TACGTA 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 117
FaiI YATR 6 cut(s) 31, 92, 126, 128, 143, 168
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 207
Kzo9I GATC 1 cut(s) 54
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 2 cut(s) 64, 95
MflI RGATCY 1 cut(s) 54
MluCI AATT 5 cut(s) 23, 64, 117, 220, 226
MnlI CCTC 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 129
NdeII GATC 1 cut(s) 54
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 208
PsiI TTATAA 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 1 cut(s) 54
SetI ASST 2 cut(s) 178, 210
SgeI CNNG 8 cut(s) 21, 52, 59, 185, 191, 199, 227, 249
SmiMI CAYNNNNRTG 1 cut(s) 129
SnaBI TACGTA 1 cut(s) 208
Sse9I AATT 5 cut(s) 23, 64, 117, 220, 226
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 115
TasI AATT 5 cut(s) 23, 64, 117, 220, 226
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 87, 111
XapI RAATTY 2 cut(s) 117, 220
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.