Rroxscaffold_5G00339740

Protein NRT1 PTR FAMILY 5.2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
8157198 .. 8163027
5830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339740.1

Sequence Viewer

Length: 1710 bp
ATGGCCGCCGTTGAACAAGGAGTTAACCCCAATCAGTATACACAAGACGGGACTGTCGATCTCAAAGGAAACCCTGTTCTTAGATCCAAGAGAGGTGGATGGACTGCTTGCGCCTTTGTTGTTGTTTATGAGGTGTTTGAACGAATGGCCTACTATGGCATATCGTCGAATTTGATCCTGTACTTGACGAAGAAGCTTCACCAAGGCACAGTCACCTCTGCTAATAATGTCACCAACTGGGTTGGCACCATTTGGATTACTCCTATTTTGGGTGCATATGTTGCTGATGCTCATCTGGGTCGTTACTGGACATTCCTCATTGCCTGTATCATCTATCTATCGGGAATGTCTGTACTTACCCTAGCAGTGTCACTTCCTGCTTTGAAACCTCCAAAATGCCTTGACGCGAATGTCGAAAACTGCAAGAAGGCCTCCACATTACAGTTAGCTGTGTTCTATGGTTCACTCTACACTCTGGCTATTGGAACAGGAGGGACAAAACCTAATATCTCAACCATTGGAGCAGACCAATTTGATGACTTTGATCCTAAGGAAAAGGCTCAAAAGCTTTCGTTCTTCAACTGGTGGATGTTCAGCATCTTCTTTGGCACACTCTTTGCCAACACAATCCTTGTCTACATTCAAGACAATGTGGGCTGGACCTTGGGATATGCGCTTCCAACTCTTGGGCTTCTCATATCTATCCTGATCTTCTTGGCTGGCACACCCTTTTATAGACACAAGGTGCCTTCTGGGAGTCCATTTACAAGAATGGCTAAAGTCATAGTGGCTGCACTAAGGAAATGGAAGGTGACTCTTCCTAGTGACCCTAAGGAATTCCATGAGCTTCACTTGGATGACTATGCAACCAAAGGAAAATTCAGGATTGATTCTACACCAAGCATAAGGTTCCTCAACAAAGCTGCTGTGAAAACAGCCTCAACTAGTCCATGGACGCTGTGCTCAGTAACTCAAGTAGAGGAGACGAAGCAAATGCACCACACTCAACCGAAGAGTTGGAAACTTCAAGATCCCCCTGCAAGTTTAGCTGGATTTGTAACCCTATCGATGCTAATCAATGTCGTCCTCTATGATCGGTTCTTTGTCAAGTTCATGAGAAAGTTGACAAAGAATCCTAGAGGAATCACTCTCCTTCAAAGAATGGGAATTGGAATGATTCTCCACATTTTCATTATGGTAATTGCATCTCTAACTGAGAGGTATCGACTTAATATTGCCAAGGAACATGGAGTAGTTGAAAGTGGAGGACAGGTTCCTCTTACCATATTGGTTTTGCTTCCTCAATTTGTGCTTATGGGAACAGCTGATGCATTTCTAGAGGTTGCAAAGATTGAGTTTTTCTATGATCAAGCACCTGAAAGCATGAAGAGTCTTGGGACTTCTTATTCCATGACCACTTTGGGAATAGGAAACTTTCTCAGTAGTTTCCTTCTTTCCACAGTTTCTCACATCACCAAAGAGCATGGACACAAAGGATGGATACTCAACAACTTGAATGCTTCTCATCTTGACTACTATTATGCCTTTTTTGCCATACTCAACTTTTTAAACTTCATTTTCTTCTTGTTTATGACTAAGATGTATGTGTACAAGGCTGAAATTTCGGATTCAATTAAAGTTCTCACCGAAGAATTGAAGGAGGCAACAATGTACAGGCTACCAAATCAAGAAGATCAGTCCAAGTCGTAG

Protein Analysis

569

Amino Acids

63.87

Weight (kDa)

9.18

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 102 - 501 1.5e-82 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46050 AT5G46050
fragaria_vesca FvH4_4g04250 FvH4_4g04270
malus_domestica MD13G1218900.v1.1
prunus_persica Prupe.1G045600_v2.0.a1
pyrus_communis pycom13g19380
rosa_chinensis RchiOBHm_Chr4g0394721
rosa_laevigata RLG00000009668
rosa_multiflora Rmu_sc0005356.1_g000012
rosa_roxburghii Rroxscaffold_5G00339740
rosa_rugosa Rorug03G0362200.1
rosa_samantha Rh4AG054700 Rh4BG052400 Rh4CG059200
rosa_wichuraiana Rw4G004360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 410
AccB1I GGYRCC 2 cut(s) 245, 745
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 2 cut(s) 38, 636
AccII CGCG 1 cut(s) 407
AciI CCGC 1 cut(s) 6
AclWI GGATC 4 cut(s) 78, 169, 539, 1025
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 169, 836, 878, 1620
AdeI CACNNNGTG 1 cut(s) 745
AfaI GTAC 4 cut(s) 182, 354, 1610, 1673
AfiI CCNNNNNNNGG 2 cut(s) 269, 686
AhlI ACTAGT 1 cut(s) 944
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AloI GAACNNNNNNTCC 4 cut(s) 60, 92, 1257, 1289
AluBI AGCT 7 cut(s) 196, 449, 568, 847, 923, 1049, 1325
AluI AGCT 7 cut(s) 196, 449, 568, 847, 923, 1049, 1325
Alw21I GWGCWC 1 cut(s) 965
Alw26I GTCTC 1 cut(s) 977
AlwI GGATC 4 cut(s) 78, 169, 539, 1025
AoxI GGCC 3 cut(s) 3, 147, 429
ApeKI GCWGC 2 cut(s) 791, 923
ApoI RAATTY 4 cut(s) 169, 836, 878, 1620
AspLEI GCGC 2 cut(s) 113, 676
AspS9I GGNCC 1 cut(s) 660
AsuHPI GGTGA 6 cut(s) 191, 205, 223, 823, 1465, 1636
AvaII GGWCC 1 cut(s) 660
AxyI CCTNAGG 2 cut(s) 549, 831
BanI GGYRCC 2 cut(s) 245, 745
Bbv12I GWGCWC 1 cut(s) 965
BbvI GCAGC 2 cut(s) 778, 910
BccI CCATC 2 cut(s) 93, 1491
BcgI CGANNNNNNTGC 2 cut(s) 976, 1010
BciVI GTATCC 1 cut(s) 1494
BclI TGATCA 1 cut(s) 1366
BcoDI GTCTC 1 cut(s) 977
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 5 cut(s) 362, 822, 945, 1137, 1337
BfuI GTATCC 1 cut(s) 1494
BisI GCNGC 3 cut(s) 6, 792, 924
BlsI GCNGC 3 cut(s) 7, 793, 925
Bme18I GGWCC 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 660
BmiI GGNNCC 4 cut(s) 247, 747, 911, 1275
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 5 cut(s) 277, 606, 1059, 1214, 1318
BmuI ACTGGG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 957
Bsa29I ATCGAT 1 cut(s) 1067
BsaBI GATNNNNATC 2 cut(s) 291, 1073
BsaJI CCNNGG 4 cut(s) 202, 663, 950, 1239
BsaXI ACNNNNNCTCC 2 cut(s) 1257, 1287
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 686
Bse1I ACTGG 3 cut(s) 242, 311, 587
Bse21I CCTNAGG 2 cut(s) 549, 831
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 2 cut(s) 291, 1073
BseCI ATCGAT 1 cut(s) 1067
BseDI CCNNGG 4 cut(s) 202, 663, 950, 1239
BseGI GGATG 4 cut(s) 104, 594, 862, 1502
BseJI GATNNNNATC 2 cut(s) 291, 1073
BseLI CCNNNNNNNGG 2 cut(s) 269, 686
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 978, 1206, 1453
BseNI ACTGG 3 cut(s) 242, 311, 587
BseRI GAGGAG 1 cut(s) 995
BseXI GCAGC 2 cut(s) 778, 910
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 3 cut(s) 5, 149, 431
BshNI GGYRCC 2 cut(s) 245, 745
BshVI ATCGAT 1 cut(s) 1067
BsiHKAI GWGCWC 1 cut(s) 965
BslFI GGGAC 3 cut(s) 64, 508, 1411
BslI CCNNNNNNNGG 2 cut(s) 269, 686
BsmAI GTCTC 1 cut(s) 977
BsmBI CGTCTC 1 cut(s) 977
BsmFI GGGAC 3 cut(s) 64, 508, 1411
BsmI GAATGC 1 cut(s) 1522
BsnI GGCC 3 cut(s) 5, 149, 431
Bsp1286I GDGCHC 1 cut(s) 965
Bsp1407I TGTACA 2 cut(s) 1608, 1671
Bsp143I GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
Bsp19I CCATGG 1 cut(s) 950
BspACI CCGC 1 cut(s) 6
BspANI GGCC 3 cut(s) 5, 149, 431
BspCNI CTCAG 3 cut(s) 977, 1207, 1452
BspDI ATCGAT 1 cut(s) 1067
BspFNI CGCG 1 cut(s) 407
BspHI TCATGA 1 cut(s) 1113
BspLI GGNNCC 4 cut(s) 247, 747, 911, 1275
BspPI GGATC 4 cut(s) 78, 169, 539, 1025
BspT107I GGYRCC 2 cut(s) 245, 745
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 2 cut(s) 1608, 1671
BsrI ACTGG 3 cut(s) 242, 311, 587
BssECI CCNNGG 4 cut(s) 202, 663, 950, 1239
BssMI GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
BssNAI GTATAC 1 cut(s) 39
BssT1I CCWWGG 4 cut(s) 202, 663, 950, 1239
Bst1107I GTATAC 1 cut(s) 39
Bst4CI ACNGT 4 cut(s) 55, 211, 444, 1462
Bst6I CTCTTC 3 cut(s) 822, 1007, 1382
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 2 cut(s) 1608, 1671
BstC8I GCNNGC 2 cut(s) 109, 721
BstDEI CTNAG 8 cut(s) 80, 549, 797, 831, 964, 1215, 1439, 1596
BstDSI CCRYGG 1 cut(s) 950
BstF5I GGATG 4 cut(s) 104, 594, 862, 1502
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 2 cut(s) 113, 676
BstKTI GATC 9 cut(s) 61, 86, 177, 547, 711, 1033, 1096, 1369, 1696
BstMAI GTCTC 1 cut(s) 977
BstMBI GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
BstMWI GCNNNNNNNGC 3 cut(s) 281, 1046, 1550
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 778, 910
BstX2I RGATCY 2 cut(s) 83, 1030
BstYI RGATCY 2 cut(s) 83, 1030
BstZ17I GTATAC 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 1067
Bsu36I CCTNAGG 2 cut(s) 549, 831
BsuI GTATCC 1 cut(s) 1494
BsuRI GGCC 3 cut(s) 5, 149, 431
BsuTUI ATCGAT 1 cut(s) 1067
BtgI CCRYGG 1 cut(s) 950
BtsCI GGATG 4 cut(s) 104, 594, 862, 1502
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 109, 721
CciI TCATGA 1 cut(s) 1113
CfoI GCGC 2 cut(s) 113, 676
Cfr13I GGNCC 1 cut(s) 660
ClaI ATCGAT 1 cut(s) 1067
CseI GACGC 2 cut(s) 413, 964
Csp6I GTAC 4 cut(s) 181, 353, 1609, 1672
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 7 cut(s) 842, 951, 1114, 1247, 1384, 1411, 1484
CviQI GTAC 4 cut(s) 181, 353, 1609, 1672
DdeI CTNAG 8 cut(s) 80, 549, 797, 831, 964, 1215, 1439, 1596
DpnI GATC 9 cut(s) 60, 85, 176, 546, 710, 1032, 1095, 1368, 1695
DpnII GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
DraI TTTAAA 1 cut(s) 1569
DraIII CACNNNGTG 1 cut(s) 745
DrdI GACNNNNNNGTC 2 cut(s) 53, 410
DseDI GACNNNNNNGTC 2 cut(s) 53, 410
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 822, 1007, 1382
EarI CTCTTC 3 cut(s) 822, 1007, 1382
Eco130I CCWWGG 4 cut(s) 202, 663, 950, 1239
Eco147I AGGCCT 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 660
Eco81I CCTNAGG 2 cut(s) 549, 831
EcoRI GAATTC 1 cut(s) 836
EcoT14I CCWWGG 4 cut(s) 202, 663, 950, 1239
EcoT22I ATGCAT 1 cut(s) 1333
ErhI CCWWGG 4 cut(s) 202, 663, 950, 1239
Esp3I CGTCTC 1 cut(s) 977
FaeI CATG 7 cut(s) 845, 954, 1117, 1250, 1387, 1414, 1487
FaqI GGGAC 3 cut(s) 64, 508, 1411
FatI CATG 7 cut(s) 841, 950, 1113, 1246, 1383, 1410, 1483
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 1366
FblI GTMKAC 2 cut(s) 38, 636
Fnu4HI GCNGC 3 cut(s) 6, 792, 924
FokI GGATG 4 cut(s) 111, 601, 869, 1509
Fsp4HI GCNGC 3 cut(s) 6, 792, 924
FspBI CTAG 5 cut(s) 362, 822, 945, 1137, 1337
GlaI GCGC 2 cut(s) 112, 675
GluI GCNGC 3 cut(s) 6, 792, 924
HaeIII GGCC 3 cut(s) 5, 149, 431
HgaI GACGC 2 cut(s) 413, 964
HhaI GCGC 2 cut(s) 113, 676
Hin1II CATG 7 cut(s) 845, 954, 1117, 1250, 1387, 1414, 1487
Hin6I GCGC 2 cut(s) 111, 674
HinP1I GCGC 2 cut(s) 111, 674
HincII GTYRAC 2 cut(s) 25, 1125
HindII GTYRAC 2 cut(s) 25, 1125
HindIII AAGCTT 2 cut(s) 194, 566
HinfI GANTC 8 cut(s) 757, 814, 890, 1132, 1143, 1177, 1390, 1628
HpaI GTTAAC 1 cut(s) 25
HphI GGTGA 6 cut(s) 191, 205, 223, 823, 1465, 1636
Hpy166II GTNNAC 6 cut(s) 25, 39, 464, 637, 1125, 1609
Hpy188I TCNGA 1 cut(s) 1627
Hpy188III TCNNGA 9 cut(s) 342, 644, 706, 883, 1028, 1114, 1337, 1529, 1688
Hpy8I GTNNAC 6 cut(s) 25, 39, 464, 637, 1125, 1609
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 6 cut(s) 421, 759, 802, 1163, 1460, 1651
HpyCH4III ACNGT 4 cut(s) 55, 211, 444, 1462
HpyCH4V TGCA 9 cut(s) 275, 423, 794, 866, 997, 1040, 1205, 1331, 1346
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 1046, 1550
HpyF3I CTNAG 8 cut(s) 80, 549, 797, 831, 964, 1215, 1439, 1596
Hsp92II CATG 7 cut(s) 845, 954, 1117, 1250, 1387, 1414, 1487
HspAI GCGC 2 cut(s) 111, 674
Ksp22I TGATCA 1 cut(s) 1366
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 2 cut(s) 778, 910
LweI GCATC 5 cut(s) 277, 606, 1059, 1214, 1318
MaeI CTAG 5 cut(s) 362, 822, 945, 1137, 1337
MaeIII GTNAC 8 cut(s) 211, 229, 302, 369, 811, 824, 967, 1057
MalI GATC 9 cut(s) 60, 85, 176, 546, 710, 1032, 1095, 1368, 1695
MboI GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
MflI RGATCY 2 cut(s) 83, 1030
MhlI GDGCHC 1 cut(s) 965
MlyI GAGTC 3 cut(s) 766, 808, 1399
MmeI TCCRAC 2 cut(s) 704, 998
Mph1103I ATGCAT 1 cut(s) 1333
MseI TTAA 4 cut(s) 24, 1230, 1568, 1635
MslI CAYNNNNRTG 1 cut(s) 855
MspA1I CMGCKG 1 cut(s) 1325
Mva1269I GAATGC 1 cut(s) 1522
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 281, 1046, 1550
NcoI CCATGG 1 cut(s) 950
NdeI CATATG 1 cut(s) 277
NdeII GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
NlaIII CATG 7 cut(s) 845, 954, 1117, 1250, 1387, 1414, 1487
NlaIV GGNNCC 4 cut(s) 247, 747, 911, 1275
NmuCI GTSAC 5 cut(s) 211, 229, 369, 811, 824
NsiI ATGCAT 1 cut(s) 1333
PagI TCATGA 1 cut(s) 1113
PceI AGGCCT 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 411
PctI GAATGC 1 cut(s) 1522
PfeI GAWTC 5 cut(s) 890, 1132, 1143, 1177, 1628
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 3 cut(s) 7, 793, 925
PleI GAGTC 3 cut(s) 765, 808, 1398
PpsI GAGTC 3 cut(s) 765, 808, 1398
PspN4I GGNNCC 4 cut(s) 247, 747, 911, 1275
PspPI GGNCC 1 cut(s) 660
PsuI RGATCY 2 cut(s) 83, 1030
PvuII CAGCTG 1 cut(s) 1325
RsaI GTAC 4 cut(s) 182, 354, 1610, 1673
RsaNI GTAC 4 cut(s) 181, 353, 1609, 1672
RseI CAYNNNNRTG 1 cut(s) 855
SaqAI TTAA 4 cut(s) 24, 1230, 1568, 1635
SatI GCNGC 3 cut(s) 6, 792, 924
Sau3AI GATC 9 cut(s) 58, 83, 174, 544, 708, 1030, 1093, 1366, 1693
Sau96I GGNCC 1 cut(s) 660
SchI GAGTC 3 cut(s) 766, 808, 1399
SduI GDGCHC 1 cut(s) 965
SfaNI GCATC 5 cut(s) 277, 606, 1059, 1214, 1318
SinI GGWCC 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 1 cut(s) 972
SmoI CTYRAG 1 cut(s) 972
SpeI ACTAGT 1 cut(s) 944
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 1 cut(s) 6
SspI AATATT 1 cut(s) 1234
SspMI CTAG 5 cut(s) 362, 822, 945, 1137, 1337
StuI AGGCCT 1 cut(s) 431
StyI CCWWGG 4 cut(s) 202, 663, 950, 1239
TaaI ACNGT 4 cut(s) 55, 211, 444, 1462
TaqI TCGA 5 cut(s) 57, 167, 414, 1067, 1225
TatI WGTACW 4 cut(s) 180, 352, 1608, 1671
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 890, 1132, 1143, 1177, 1628
Tru1I TTAA 4 cut(s) 24, 1230, 1568, 1635
Tru9I TTAA 4 cut(s) 24, 1230, 1568, 1635
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 5 cut(s) 211, 229, 369, 811, 824
TseI GCWGC 2 cut(s) 791, 923
Tsp45I GTSAC 5 cut(s) 211, 229, 369, 811, 824
TspDTI ATGAA 4 cut(s) 1102, 1180, 1400, 1564
TspRI CASTG 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 660
XapI RAATTY 4 cut(s) 169, 836, 878, 1620
XbaI TCTAGA 1 cut(s) 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 1417
XmiI GTMKAC 2 cut(s) 38, 636
XspI CTAG 5 cut(s) 362, 822, 945, 1137, 1337
Zsp2I ATGCAT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.