Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015093

Physical Location & Seq

Genomic Coordinates Forward (+)

9336121 .. 9342766

Gene Structure 6646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG052400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGTCTGTACTTACCCTAGCAGTGTCACTTCCTGCTTTGAAACCTCCAAAATGCCTCGACGCGAATATCGAAAACTGCAAGAAGGCCTCCACATTACAGTTAGCTGTGTTCTATGGTTCACTCTACACTCTGGCTATTGGAACAGGAGGGACAAAACCTAATATCTCAACCATTGGAGCAGACCAATTTGATGACTTTGATCCTAAGGAAAAGGCTCAAAAGCTTTCGTTCTTCAACTGGTGGATGTTCAGCATCTTCTTTGGCACACTCTTTGCCAACACAATCCTTGTCTACATTCAAGACAATGTGGGCTGGACCTTGGGATATGCGCTTCCAACTCTTGGGCTTCTCATATCTATCCTGATCTTCTTGGCTGGCACACCCTTTTATAGACACAAGGTGCCTTCTGGGAGTCCATTTACAAGAATGGCTAAAGTCATAGTGGCTGCACTAAGGAAATGGAAGGTGACTCTTCCTAGTGACCCTAAGGAATTCCATGAGCTTCACTTGGATGACTATGCAACCAAAGGAAAATTCAGGATTGATTCTACACCAAGCATAAGGTTCCTCAACAAAGCTGCTGTGAAAACAGCCTCAACTAGTCCATGGACGCTGTGCTCAGTAACTCAAGTAGAGGAGACGAAGCAAATGTTGAGAATGATCCCAATCTTGTTTGCAACATTCGTTCCGAGCATTATGGTTGCACAAATCAATACCCTATTTGTCAAACAAGGCACCACGCTCAACCGAAGAGTTGGAAACTTCAAGATCCCCCCTGCAAGTTTAGCTGGATTTGTAACCCTATCGATGCTAATCAATGTCGTGCTCTATGATCGGTTCTTTGTCAAGTTCATGAGAAAGTTGACAAAGAATCCTAGAGGAATCACTCTCCTTCAAAGAATGGGAATTGGAATGATTCTCCACATTTTCATTATGGTAATTGCATCTCTAACTGAGAGGTATCGACTTAATATTGCCAAGGAACATGGAGTAGTTGAAAGTGGAGGACAGGTTCCTCTTACCATATTGGTTTTGCTTCCTCAATTTGTGCTTATGGGAACAGCTGATGCATTTCTAGAGGTTGCAAAGATTGAGTTTTTCTATGATCAAGCACCTGAAAGCATGAAGAGTCTTGGGACTTCTTATTCCATGACCACTTTGGGAATAGGAAACTTTCTCAGTAGTTTCCTTCTTTCGACAGTTTCTCACATCACCAAAGAGCATGGACACAAAGGATGGATACTCAACAACTTGAATGCTTCTCATCTTGACTACTATTATGCCTTTTTTGCCATACTCAACTTTTTAAACTTCATTTTCTTCTTGTTTATGACTAAGATGTATGTGTACAAGGCTGAAATTTCGGATTCAATTAAAGTTCTCACTGAAGAATTGAAGGAGGCAACAATGTACAGGCTACCAAATCAAGAAGATCAGTCCAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0006810 GO:0006857 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009624 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010243 GO:0014070 GO:0015833 GO:0022857 GO:0033993 GO:0035672 GO:0035673 GO:0042221 GO:0042493 GO:0042538 GO:0042742 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043200 GO:0043201 GO:0043207 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0080052 GO:0080053 GO:0097305 GO:0098542 GO:1901698 GO:1901700 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

482

Amino Acids

54.22

Weight (kDa)

9.45

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 414	9.2e-98	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46050 AT5G46050
fragaria_vesca	FvH4_4g04250 FvH4_4g04270
malus_domestica	MD13G1218900.v1.1
prunus_persica	Prupe.1G045600_v2.0.a1
pyrus_communis	pycom13g19380
rosa_chinensis	RchiOBHm_Chr4g0394721
rosa_laevigata	RLG00000009668
rosa_multiflora	Rmu_sc0005356.1_g000012
rosa_roxburghii	Rroxscaffold_5G00339740
rosa_rugosa	Rorug03G0362200.1
rosa_samantha	Rh4AG054700 Rh4BG052400 Rh4CG059200
rosa_wichuraiana	Rw4G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	400, 734
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	62
AclWI	GGATC	3 cut(s)	194, 655, 763
AcsI	RAATTY	3 cut(s)	491, 533, 1359
AcuI	CTGAAG	1 cut(s)	1407
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	3 cut(s)	9, 1349, 1412
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	9 cut(s)	40, 235, 299, 766, 896, 998, 1255, 1371, 1396
AhlI	ACTAGT	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AloI	GAACNNNNNNTCC	2 cut(s)	996, 1028
AluBI	AGCT	6 cut(s)	104, 223, 502, 578, 788, 1064
AluI	AGCT	6 cut(s)	104, 223, 502, 578, 788, 1064
Alw21I	GWGCWC	2 cut(s)	620, 828
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	194, 655, 763
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	446, 578
ApoI	RAATTY	3 cut(s)	491, 533, 1359
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	478, 1204
AvaII	GGWCC	1 cut(s)	315
AxyI	CCTNAGG	2 cut(s)	204, 486
BanI	GGYRCC	2 cut(s)	400, 734
Bbv12I	GWGCWC	2 cut(s)	620, 828
BbvI	GCAGC	2 cut(s)	433, 565
BccI	CCATC	1 cut(s)	1230
BciVI	GTATCC	1 cut(s)	1233
BclI	TGATCA	1 cut(s)	1105
BcoDI	GTCTC	1 cut(s)	632
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	5 cut(s)	17, 477, 600, 876, 1076
BfuI	GTATCC	1 cut(s)	1233
BisI	GCNGC	2 cut(s)	447, 579
BlsI	GCNGC	2 cut(s)	448, 580
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	4 cut(s)	402, 566, 736, 1014
BmsI	GCATC	4 cut(s)	261, 798, 953, 1057
BpuEI	CTTGAG	1 cut(s)	612
Bsa29I	ATCGAT	1 cut(s)	806
BsaBI	GATNNNNATC	2 cut(s)	665, 812
BsaJI	CCNNGG	3 cut(s)	318, 605, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	996, 1026
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	2 cut(s)	204, 486
Bse8I	GATNNNNATC	2 cut(s)	665, 812
BseCI	ATCGAT	1 cut(s)	806
BseDI	CCNNGG	3 cut(s)	318, 605, 978
BseGI	GGATG	3 cut(s)	249, 517, 1241
BseJI	GATNNNNATC	2 cut(s)	665, 812
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	633, 945, 1192
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	433, 565
BsgI	GTGCAG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	2 cut(s)	400, 734
BshVI	ATCGAT	1 cut(s)	806
BsiHKAI	GWGCWC	2 cut(s)	620, 828
BslFI	GGGAC	2 cut(s)	163, 1150
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	163, 1150
BsmI	GAATGC	1 cut(s)	1261
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	620, 828
Bsp1407I	TGTACA	2 cut(s)	1347, 1410
Bsp143I	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
Bsp19I	CCATGG	1 cut(s)	605
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	632, 946, 1191
BspDI	ATCGAT	1 cut(s)	806
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	4 cut(s)	402, 566, 736, 1014
BspPI	GGATC	3 cut(s)	194, 655, 763
BspT107I	GGYRCC	2 cut(s)	400, 734
BsrGI	TGTACA	2 cut(s)	1347, 1410
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	318, 605, 978
BssMI	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
BssT1I	CCWWGG	3 cut(s)	318, 605, 978
Bst4CI	ACNGT	2 cut(s)	99, 1201
Bst6I	CTCTTC	3 cut(s)	477, 745, 1121
BstAUI	TGTACA	2 cut(s)	1347, 1410
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	7 cut(s)	204, 452, 486, 619, 954, 1178, 1335
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	249, 517, 1241
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	7 cut(s)	202, 366, 663, 771, 835, 1108, 1435
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
BstMWI	GCNNNNNNNGC	2 cut(s)	785, 1289
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	433, 565
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
Bsu15I	ATCGAT	1 cut(s)	806
Bsu36I	CCTNAGG	2 cut(s)	204, 486
BsuI	GTATCC	1 cut(s)	1233
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	3 cut(s)	249, 517, 1241
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 1383
Cac8I	GCNNGC	1 cut(s)	376
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	806
CseI	GACGC	2 cut(s)	68, 619
Csp6I	GTAC	3 cut(s)	8, 1348, 1411
CviAII	CATG	7 cut(s)	497, 606, 853, 986, 1123, 1150, 1223
CviQI	GTAC	3 cut(s)	8, 1348, 1411
DdeI	CTNAG	7 cut(s)	204, 452, 486, 619, 954, 1178, 1335
DpnI	GATC	7 cut(s)	201, 365, 662, 770, 834, 1107, 1434
DpnII	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
DraI	TTTAAA	1 cut(s)	1308
DraIII	CACNNNGTG	1 cut(s)	400
Eam1104I	CTCTTC	3 cut(s)	477, 745, 1121
EarI	CTCTTC	3 cut(s)	477, 745, 1121
Eco130I	CCWWGG	3 cut(s)	318, 605, 978
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	1407
Eco81I	CCTNAGG	2 cut(s)	204, 486
EcoRI	GAATTC	1 cut(s)	491
EcoT14I	CCWWGG	3 cut(s)	318, 605, 978
EcoT22I	ATGCAT	1 cut(s)	1072
ErhI	CCWWGG	3 cut(s)	318, 605, 978
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	7 cut(s)	500, 609, 856, 989, 1126, 1153, 1226
FaqI	GGGAC	2 cut(s)	163, 1150
FatI	CATG	7 cut(s)	496, 605, 852, 985, 1122, 1149, 1222
FbaI	TGATCA	1 cut(s)	1105
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	447, 579
FokI	GGATG	3 cut(s)	256, 524, 1248
Fsp4HI	GCNGC	2 cut(s)	447, 579
FspBI	CTAG	5 cut(s)	17, 477, 600, 876, 1076
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	447, 579
HaeIII	GGCC	1 cut(s)	86
HgaI	GACGC	2 cut(s)	68, 619
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	7 cut(s)	500, 609, 856, 989, 1126, 1153, 1226
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	8 cut(s)	412, 469, 545, 871, 882, 916, 1129, 1367
HphI	GGTGA	2 cut(s)	478, 1204
Hpy166II	GTNNAC	4 cut(s)	119, 292, 864, 1348
Hpy188I	TCNGA	2 cut(s)	690, 1366
Hpy188III	TCNNGA	8 cut(s)	299, 361, 538, 766, 853, 1076, 1268, 1427
Hpy8I	GTNNAC	4 cut(s)	119, 292, 864, 1348
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	6 cut(s)	76, 414, 457, 902, 1199, 1390
HpyCH4III	ACNGT	2 cut(s)	99, 1201
HpyCH4V	TGCA	9 cut(s)	78, 449, 521, 677, 704, 779, 944, 1070, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	785, 1289
HpyF3I	CTNAG	7 cut(s)	204, 452, 486, 619, 954, 1178, 1335
Hsp92II	CATG	7 cut(s)	500, 609, 856, 989, 1126, 1153, 1226
HspAI	GCGC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	2 cut(s)	433, 565
LweI	GCATC	4 cut(s)	261, 798, 953, 1057
MaeI	CTAG	5 cut(s)	17, 477, 600, 876, 1076
MaeIII	GTNAC	5 cut(s)	24, 466, 479, 622, 796
MalI	GATC	7 cut(s)	201, 365, 662, 770, 834, 1107, 1434
MboI	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
MboII	GAAGA	9 cut(s)	223, 247, 358, 464, 762, 1138, 1312, 1400, 1442
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	2 cut(s)	620, 828
MluCI	AATT	9 cut(s)	185, 491, 533, 906, 939, 1043, 1359, 1371, 1391
MlyI	GAGTC	3 cut(s)	421, 463, 1138
MmeI	TCCRAC	2 cut(s)	359, 736
Mph1103I	ATGCAT	1 cut(s)	1072
MseI	TTAA	3 cut(s)	969, 1307, 1374
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	1064
Mva1269I	GAATGC	1 cut(s)	1261
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	785, 1289
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
NlaIII	CATG	7 cut(s)	500, 609, 856, 989, 1126, 1153, 1226
NlaIV	GGNNCC	4 cut(s)	402, 566, 736, 1014
NmuCI	GTSAC	3 cut(s)	24, 466, 479
NsiI	ATGCAT	1 cut(s)	1072
PagI	TCATGA	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	1261
PfeI	GAWTC	5 cut(s)	545, 871, 882, 916, 1367
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	448, 580
PleI	GAGTC	3 cut(s)	420, 463, 1137
PpsI	GAGTC	3 cut(s)	420, 463, 1137
PspN4I	GGNNCC	4 cut(s)	402, 566, 736, 1014
PspPI	GGNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	1064
RsaI	GTAC	3 cut(s)	9, 1349, 1412
RsaNI	GTAC	3 cut(s)	8, 1348, 1411
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	969, 1307, 1374
SatI	GCNGC	2 cut(s)	447, 579
Sau3AI	GATC	7 cut(s)	199, 363, 660, 768, 832, 1105, 1432
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	421, 463, 1138
SduI	GDGCHC	2 cut(s)	620, 828
SfaNI	GCATC	4 cut(s)	261, 798, 953, 1057
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	9 cut(s)	185, 491, 533, 906, 939, 1043, 1359, 1371, 1391
SseBI	AGGCCT	1 cut(s)	86
SspI	AATATT	1 cut(s)	973
SspMI	CTAG	5 cut(s)	17, 477, 600, 876, 1076
StuI	AGGCCT	1 cut(s)	86
StyI	CCWWGG	3 cut(s)	318, 605, 978
TaaI	ACNGT	2 cut(s)	99, 1201
TaqI	TCGA	5 cut(s)	57, 69, 806, 964, 1196
TasI	AATT	9 cut(s)	185, 491, 533, 906, 939, 1043, 1359, 1371, 1391
TatI	WGTACW	3 cut(s)	7, 1347, 1410
TfiI	GAWTC	5 cut(s)	545, 871, 882, 916, 1367
Tru1I	TTAA	3 cut(s)	969, 1307, 1374
Tru9I	TTAA	3 cut(s)	969, 1307, 1374
TscAI	CASTG	2 cut(s)	27, 1390
TseFI	GTSAC	3 cut(s)	24, 466, 479
TseI	GCWGC	2 cut(s)	446, 578
Tsp45I	GTSAC	3 cut(s)	24, 466, 479
TspDTI	ATGAA	4 cut(s)	841, 919, 1139, 1303
TspRI	CASTG	2 cut(s)	27, 1390
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	3 cut(s)	491, 533, 1359
XbaI	TCTAGA	1 cut(s)	1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1156
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	5 cut(s)	17, 477, 600, 876, 1076
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.