Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015093

Physical Location & Seq

Genomic Coordinates Forward (+)

11359386 .. 11366007

Gene Structure 6622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGCTGCCGTTGAACAAGGAGTTAACCCCAATCAGTATACACAAGATGGGACTGTCGATCTCAAAGGAAACCCTGTTCTTAGATCCAAGAGAGGCGGATGGACTGCTTGCGCCTTTGTTGTTGTTTATGAGGTGTTTGAACGAATGGCCTACTATGGCATATCGTCGAATTTGATCCTGTATTTGACGAAGAAGCTTCACCAAGGCACAGTCACCTCTGCTAATAATGTCACCAACTGGGTTGGCACCATTTGGATTACTCCTATTTTGGGTGCATATATTGCTGATGCTCATCTGGGACGTTACTGGACATTCCTCATTGCCTGTATCATCTATCTATCGGGAATGTCTGTACTTACCCTAGCAGTGTCACTTCCTGCTTTGAAACCTCCAAAATGCCTCGACGCGAATATCGAAAACTGCAAGAAGGCCTCCACATTACAGTTAGCTGTGTTCTATGGTTCACTCTACACTCTGGCTATTGGAACAGGAGGGACAAAACCTAATATCTCAACCATTGGAGCAGACCAATTTGATGACTTTGATCCTAAGGAAAAGGCTCAAAAGCTTTCGTTCTTCAACTGGTGGATGTTCAGCATCTTCTTTGGCACACTCTTTGCCAACACAATCCTTGTCTACATTCAAGACAATGTGGGCTGGACCTTGGGATATGCGCTTCCAACTCTTGGGCTTCTCATATCTATCCTGATCTTCTTGGCTGGCACACCCTTTTATAGACACAAGGTGCCTTCTGGGAGTCCATTTACAAGAATGGCTAAAGTCATAGTGGCTGCACTAAGGAAATGGAAGGTGACTCTTCCTAGTGACCCTAAGGAATTCCATGAGCTTCACTTGGATGACTATGCAACCAAAGGAAAATTCAGGATTGATTCTACACCAAGCATAAGGTTCCTCAACAAAGCTGCTGTGAAAACAGCCTCAACTAGTCCATGGACGCTGTGCTCAGTAACTCAAGTAGAGGAGACGAAGCAAATGTTGAGAATGATCCCAATCTTGTTTGCAACATTCGTTCCGAGCATTATGGTTGCACAAATCAATACCCTATTTGTCAAACAAGGCACCACGCTCAACCGAAGAGTTGGAAACTTCAAGATCCCCCCTGCAAGTTTAGCTGGATTTGTAACCCTATCGATGCTAATCAATGTCGTGCTCTATGATCGGTTCTTTGTCAAGTTCATGAGAAAGTTGACAAAGAATCCTAGAGGAATCACTCTCCTTCAAAGAATGGGAATTGGAATGATTCTCCACATTTTCATTATGGTAATTGCATCTCTAACTGAGAGGTATCGACTTAATATTGCCAAGGAACATGGAGTAGTTGAAAGTGGAGGACAGGTTCCTCTTACCATATTGGTTTTGCTTCCTCAATTTGTGCTTATGGGAACAGCTGATGCATTTCTAGAGGTTGCAAAGATTGAGTTTTTCTATGATCAAGCACCTGAAAGCATGAAGAGTCTTGGGACTTCTTATTCCATGACCACTTTGGGAATAGGAAACTTTCTCAGTAGTTTCCTTCTTTCGACAGTTTCTCACATCACCAAAGAGCATGGACACAAAGGATGGATACTCAACAACTTGAATGCTTCTCATCTTGACTACTATTATGCCTTTTTTGCCATACTCAACTTTTTAAACTTCATTTTCTTCTTGTTTATGACTAAGATGTATGTGTACAAGGCTGAAATTTCGGATTCAATTAAAGTTCTCACTGAAGAATTGAAGGAGGCAACAATGTACAGGCTACCAAATCAAGAAGATCAGTCCAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0006810 GO:0006857 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009624 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010243 GO:0014070 GO:0015833 GO:0022857 GO:0033993 GO:0035672 GO:0035673 GO:0042221 GO:0042493 GO:0042538 GO:0042742 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043200 GO:0043201 GO:0043207 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0080052 GO:0080053 GO:0097305 GO:0098542 GO:1901698 GO:1901700 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

597

Amino Acids

66.95

Weight (kDa)

9.36

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	102 - 529	4.4e-102	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46050 AT5G46050
fragaria_vesca	FvH4_4g04250 FvH4_4g04270
malus_domestica	MD13G1218900.v1.1
prunus_persica	Prupe.1G045600_v2.0.a1
pyrus_communis	pycom13g19380
rosa_chinensis	RchiOBHm_Chr4g0394721
rosa_laevigata	RLG00000009668
rosa_multiflora	Rmu_sc0005356.1_g000012
rosa_roxburghii	Rroxscaffold_5G00339740
rosa_rugosa	Rorug03G0362200.1
rosa_samantha	Rh4AG054700 Rh4BG052400 Rh4CG059200
rosa_wichuraiana	Rw4G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	245, 745, 1079
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccI	GTMKAC	2 cut(s)	38, 636
AccII	CGCG	1 cut(s)	407
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	5 cut(s)	78, 169, 539, 1000, 1108
AcsI	RAATTY	4 cut(s)	169, 836, 878, 1704
AcuI	CTGAAG	1 cut(s)	1752
AdeI	CACNNNGTG	1 cut(s)	745
AfaI	GTAC	3 cut(s)	354, 1694, 1757
AfiI	CCNNNNNNNGG	2 cut(s)	269, 686
AhlI	ACTAGT	1 cut(s)	944
AjuI	GAANNNNNNNTTGG	2 cut(s)	863, 895
AloI	GAACNNNNNNTCC	4 cut(s)	60, 92, 1341, 1373
AluBI	AGCT	7 cut(s)	196, 449, 568, 847, 923, 1133, 1409
AluI	AGCT	7 cut(s)	196, 449, 568, 847, 923, 1133, 1409
Alw21I	GWGCWC	2 cut(s)	965, 1173
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	5 cut(s)	78, 169, 539, 1000, 1108
AoxI	GGCC	2 cut(s)	147, 429
ApeKI	GCWGC	3 cut(s)	5, 791, 923
ApoI	RAATTY	4 cut(s)	169, 836, 878, 1704
AspLEI	GCGC	2 cut(s)	113, 676
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	5 cut(s)	191, 205, 223, 823, 1549
AvaII	GGWCC	1 cut(s)	660
AxyI	CCTNAGG	2 cut(s)	549, 831
BanI	GGYRCC	3 cut(s)	245, 745, 1079
Bbv12I	GWGCWC	2 cut(s)	965, 1173
BbvI	GCAGC	2 cut(s)	778, 910
BccI	CCATC	3 cut(s)	41, 93, 1575
BciVI	GTATCC	1 cut(s)	1578
BclI	TGATCA	1 cut(s)	1450
BcoDI	GTCTC	1 cut(s)	977
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	5 cut(s)	362, 822, 945, 1221, 1421
BfuI	GTATCC	1 cut(s)	1578
BisI	GCNGC	3 cut(s)	6, 792, 924
BlsI	GCNGC	3 cut(s)	7, 793, 925
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	5 cut(s)	247, 747, 911, 1081, 1359
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	5 cut(s)	277, 606, 1143, 1298, 1402
BmuI	ACTGGG	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	957
Bsa29I	ATCGAT	1 cut(s)	1151
BsaBI	GATNNNNATC	3 cut(s)	291, 1010, 1157
BsaJI	CCNNGG	4 cut(s)	202, 663, 950, 1323
BsaXI	ACNNNNNCTCC	2 cut(s)	1341, 1371
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 686
Bse1I	ACTGG	3 cut(s)	242, 311, 587
Bse21I	CCTNAGG	2 cut(s)	549, 831
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	3 cut(s)	291, 1010, 1157
BseCI	ATCGAT	1 cut(s)	1151
BseDI	CCNNGG	4 cut(s)	202, 663, 950, 1323
BseGI	GGATG	4 cut(s)	104, 594, 862, 1586
BseJI	GATNNNNATC	3 cut(s)	291, 1010, 1157
BseLI	CCNNNNNNNGG	2 cut(s)	269, 686
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	978, 1290, 1537
BseNI	ACTGG	3 cut(s)	242, 311, 587
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	2 cut(s)	778, 910
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	149, 431
BshNI	GGYRCC	3 cut(s)	245, 745, 1079
BshVI	ATCGAT	1 cut(s)	1151
BsiHKAI	GWGCWC	2 cut(s)	965, 1173
BslFI	GGGAC	4 cut(s)	64, 312, 508, 1495
BslI	CCNNNNNNNGG	2 cut(s)	269, 686
BsmAI	GTCTC	1 cut(s)	977
BsmBI	CGTCTC	1 cut(s)	977
BsmFI	GGGAC	4 cut(s)	64, 312, 508, 1495
BsmI	GAATGC	1 cut(s)	1606
BsnI	GGCC	2 cut(s)	149, 431
Bsp1286I	GDGCHC	2 cut(s)	965, 1173
Bsp1407I	TGTACA	2 cut(s)	1692, 1755
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	149, 431
BspCNI	CTCAG	3 cut(s)	977, 1291, 1536
BspDI	ATCGAT	1 cut(s)	1151
BspFNI	CGCG	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	1197
BspLI	GGNNCC	5 cut(s)	247, 747, 911, 1081, 1359
BspPI	GGATC	5 cut(s)	78, 169, 539, 1000, 1108
BspT107I	GGYRCC	3 cut(s)	245, 745, 1079
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	2 cut(s)	1692, 1755
BsrI	ACTGG	3 cut(s)	242, 311, 587
BssECI	CCNNGG	4 cut(s)	202, 663, 950, 1323
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	4 cut(s)	202, 663, 950, 1323
Bst1107I	GTATAC	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	55, 211, 444, 1546
Bst6I	CTCTTC	3 cut(s)	822, 1090, 1466
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	2 cut(s)	1692, 1755
BstC8I	GCNNGC	2 cut(s)	109, 721
BstDEI	CTNAG	8 cut(s)	80, 549, 797, 831, 964, 1299, 1523, 1680
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	4 cut(s)	104, 594, 862, 1586
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	113, 676
BstMAI	GTCTC	1 cut(s)	977
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 1130, 1634
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	778, 910
BstX2I	RGATCY	2 cut(s)	83, 1113
BstYI	RGATCY	2 cut(s)	83, 1113
BstZ17I	GTATAC	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	1151
Bsu36I	CCTNAGG	2 cut(s)	549, 831
BsuI	GTATCC	1 cut(s)	1578
BsuRI	GGCC	2 cut(s)	149, 431
BsuTUI	ATCGAT	1 cut(s)	1151
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	4 cut(s)	104, 594, 862, 1586
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 1728
Cac8I	GCNNGC	2 cut(s)	109, 721
CciI	TCATGA	1 cut(s)	1197
CfoI	GCGC	2 cut(s)	113, 676
Cfr13I	GGNCC	1 cut(s)	660
ClaI	ATCGAT	1 cut(s)	1151
CseI	GACGC	2 cut(s)	413, 964
Csp6I	GTAC	3 cut(s)	353, 1693, 1756
CviAII	CATG	7 cut(s)	842, 951, 1198, 1331, 1468, 1495, 1568
CviQI	GTAC	3 cut(s)	353, 1693, 1756
DdeI	CTNAG	8 cut(s)	80, 549, 797, 831, 964, 1299, 1523, 1680
DraI	TTTAAA	1 cut(s)	1653
DraIII	CACNNNGTG	1 cut(s)	745
Eam1104I	CTCTTC	3 cut(s)	822, 1090, 1466
EarI	CTCTTC	3 cut(s)	822, 1090, 1466
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	4 cut(s)	202, 663, 950, 1323
Eco147I	AGGCCT	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	1752
Eco81I	CCTNAGG	2 cut(s)	549, 831
EcoRI	GAATTC	1 cut(s)	836
EcoT14I	CCWWGG	4 cut(s)	202, 663, 950, 1323
EcoT22I	ATGCAT	1 cut(s)	1417
ErhI	CCWWGG	4 cut(s)	202, 663, 950, 1323
Esp3I	CGTCTC	1 cut(s)	977
FaeI	CATG	7 cut(s)	845, 954, 1201, 1334, 1471, 1498, 1571
FaqI	GGGAC	4 cut(s)	64, 312, 508, 1495
FatI	CATG	7 cut(s)	841, 950, 1197, 1330, 1467, 1494, 1567
FbaI	TGATCA	1 cut(s)	1450
FblI	GTMKAC	2 cut(s)	38, 636
Fnu4HI	GCNGC	3 cut(s)	6, 792, 924
FokI	GGATG	4 cut(s)	111, 601, 869, 1593
Fsp4HI	GCNGC	3 cut(s)	6, 792, 924
FspBI	CTAG	5 cut(s)	362, 822, 945, 1221, 1421
GlaI	GCGC	2 cut(s)	112, 675
GluI	GCNGC	3 cut(s)	6, 792, 924
HaeIII	GGCC	2 cut(s)	149, 431
HgaI	GACGC	2 cut(s)	413, 964
HhaI	GCGC	2 cut(s)	113, 676
Hin1II	CATG	7 cut(s)	845, 954, 1201, 1334, 1471, 1498, 1571
Hin6I	GCGC	2 cut(s)	111, 674
HinP1I	GCGC	2 cut(s)	111, 674
HincII	GTYRAC	2 cut(s)	25, 1209
HindII	GTYRAC	2 cut(s)	25, 1209
HindIII	AAGCTT	2 cut(s)	194, 566
HinfI	GANTC	8 cut(s)	757, 814, 890, 1216, 1227, 1261, 1474, 1712
HpaI	GTTAAC	1 cut(s)	25
HphI	GGTGA	5 cut(s)	191, 205, 223, 823, 1549
Hpy166II	GTNNAC	6 cut(s)	25, 39, 464, 637, 1209, 1693
Hpy188I	TCNGA	2 cut(s)	1035, 1711
Hpy188III	TCNNGA	9 cut(s)	342, 644, 706, 883, 1111, 1198, 1421, 1613, 1772
Hpy8I	GTNNAC	6 cut(s)	25, 39, 464, 637, 1209, 1693
Hpy99I	CGWCG	2 cut(s)	169, 407
HpyAV	CCTTC	6 cut(s)	421, 759, 802, 1247, 1544, 1735
HpyCH4III	ACNGT	4 cut(s)	55, 211, 444, 1546
HpyCH4IV	ACGT	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 1130, 1634
HpyF3I	CTNAG	8 cut(s)	80, 549, 797, 831, 964, 1299, 1523, 1680
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	7 cut(s)	845, 954, 1201, 1334, 1471, 1498, 1571
HspAI	GCGC	2 cut(s)	111, 674
Ksp22I	TGATCA	1 cut(s)	1450
KspAI	GTTAAC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	2 cut(s)	778, 910
LweI	GCATC	5 cut(s)	277, 606, 1143, 1298, 1402
MaeI	CTAG	5 cut(s)	362, 822, 945, 1221, 1421
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	8 cut(s)	211, 229, 302, 369, 811, 824, 967, 1141
MflI	RGATCY	2 cut(s)	83, 1113
MhlI	GDGCHC	2 cut(s)	965, 1173
MlyI	GAGTC	3 cut(s)	766, 808, 1483
MmeI	TCCRAC	2 cut(s)	704, 1081
Mph1103I	ATGCAT	1 cut(s)	1417
MseI	TTAA	4 cut(s)	24, 1314, 1652, 1719
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	1409
Mva1269I	GAATGC	1 cut(s)	1606
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	281, 1130, 1634
NcoI	CCATGG	1 cut(s)	950
NlaIII	CATG	7 cut(s)	845, 954, 1201, 1334, 1471, 1498, 1571
NlaIV	GGNNCC	5 cut(s)	247, 747, 911, 1081, 1359
NmuCI	GTSAC	5 cut(s)	211, 229, 369, 811, 824
NsiI	ATGCAT	1 cut(s)	1417
PagI	TCATGA	1 cut(s)	1197
PceI	AGGCCT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	1606
PfeI	GAWTC	5 cut(s)	890, 1216, 1227, 1261, 1712
PflMI	CCANNNNNTGG	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	7, 793, 925
PleI	GAGTC	3 cut(s)	765, 808, 1482
PpsI	GAGTC	3 cut(s)	765, 808, 1482
PspN4I	GGNNCC	5 cut(s)	247, 747, 911, 1081, 1359
PspPI	GGNCC	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	83, 1113
PvuII	CAGCTG	1 cut(s)	1409
RsaI	GTAC	3 cut(s)	354, 1694, 1757
RsaNI	GTAC	3 cut(s)	353, 1693, 1756
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	4 cut(s)	24, 1314, 1652, 1719
SatI	GCNGC	3 cut(s)	6, 792, 924
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	3 cut(s)	766, 808, 1483
SduI	GDGCHC	2 cut(s)	965, 1173
SfaNI	GCATC	5 cut(s)	277, 606, 1143, 1298, 1402
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	972
SmoI	CTYRAG	1 cut(s)	972
SpeI	ACTAGT	1 cut(s)	944
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	96
SspI	AATATT	1 cut(s)	1318
SspMI	CTAG	5 cut(s)	362, 822, 945, 1221, 1421
StuI	AGGCCT	1 cut(s)	431
StyI	CCWWGG	4 cut(s)	202, 663, 950, 1323
TaaI	ACNGT	4 cut(s)	55, 211, 444, 1546
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	7 cut(s)	57, 167, 402, 414, 1151, 1309, 1541
TatI	WGTACW	3 cut(s)	352, 1692, 1755
TfiI	GAWTC	5 cut(s)	890, 1216, 1227, 1261, 1712
Tru1I	TTAA	4 cut(s)	24, 1314, 1652, 1719
Tru9I	TTAA	4 cut(s)	24, 1314, 1652, 1719
TscAI	CASTG	2 cut(s)	372, 1735
TseFI	GTSAC	5 cut(s)	211, 229, 369, 811, 824
TseI	GCWGC	3 cut(s)	5, 791, 923
Tsp45I	GTSAC	5 cut(s)	211, 229, 369, 811, 824
TspDTI	ATGAA	4 cut(s)	1186, 1264, 1484, 1648
TspRI	CASTG	2 cut(s)	372, 1735
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	4 cut(s)	169, 836, 878, 1704
XbaI	TCTAGA	1 cut(s)	1420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1501
XmiI	GTMKAC	2 cut(s)	38, 636
XspI	CTAG	5 cut(s)	362, 822, 945, 1221, 1421
Zsp2I	ATGCAT	1 cut(s)	1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.