Rroxscaffold_5G00342900

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
12088350 .. 12094153
5804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342900.1

Sequence Viewer

Length: 180 bp
ATGGAGAATCAAAATCGCATACTCAGGGATACACTACAGCAGAGGATCACAAACAAGAAGGTAAGTCTTAACAACCGTAAAGTCCCAAAATTGGCTTCCTACCGTAATGCTGCAGACGCAACCTCGGGTTTAGCCATGATTACCCTAACCTGCAGGATTAACCCTTACACCATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.75

Weight (kDa)

10.28

Isoelectric Point (pI)

25.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019121)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 124
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 179
BciVI GTATCC 1 cut(s) 22
BfmI CTRYAG 3 cut(s) 35, 111, 151
BfuAI ACCTGC 1 cut(s) 158
BfuI GTATCC 1 cut(s) 22
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 124
Bsp143I GATC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 36
BspMAI CTGCAG 2 cut(s) 115, 155
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 77, 104
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSFI CTRYAG 3 cut(s) 35, 111, 151
BstV1I GCAGC 1 cut(s) 97
BsuI GTATCC 1 cut(s) 22
BveI ACCTGC 1 cut(s) 158
CseI GACGC 1 cut(s) 125
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 95, 134
CviKI_1 RGCY 2 cut(s) 95, 134
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 124
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 20, 137
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HgaI GACGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 139
HinfI GANTC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 77, 104
HpyCH4V TGCA 2 cut(s) 113, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 3 cut(s) 10, 139, 163
Lsp1109I GCAGC 1 cut(s) 97
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MluCI AATT 1 cut(s) 89
MnlI CCTC 2 cut(s) 36, 133
MseI TTAA 2 cut(s) 69, 159
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 139
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 112
PstI CTGCAG 2 cut(s) 115, 155
SaqAI TTAA 2 cut(s) 69, 159
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 45
SbfI CCTGCAGG 1 cut(s) 155
SdaI CCTGCAGG 1 cut(s) 155
SetI ASST 3 cut(s) 63, 125, 152
SfcI CTRYAG 3 cut(s) 35, 111, 151
SgeI CNNG 7 cut(s) 37, 67, 136, 138, 148, 162, 166
Sse8387I CCTGCAGG 1 cut(s) 155
Sse9I AATT 1 cut(s) 89
TaaI ACNGT 2 cut(s) 77, 104
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 69, 159
Tru9I TTAA 2 cut(s) 69, 159
TseI GCWGC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.