Rh3CG050100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019121
Physical Location & Seq
Reverse (-)
3412837 .. 3413106
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG050100.1

Sequence Viewer

Length: 270 bp
ATGGGTCAAGTACCTGCTGTGGTGCTGTTCACCTTCAGGATTTGCGCCTGCTCCTCTGCAGAGACGTCTATCGAGACATTGACACTCGCCCAGGACCCCAACTCCATTGGTTACGCCAAGAAGTACTTGTTGGAAATAGTGGAGAAGGGAATGAGGCCCAATGCCGATACCTATAGATCTGTGGTCGAGGAGTTTTCTCGGGAAGAGAAGATGGAGGAATGCTTGGAATTAATGAATCAGATGAAGGCTAAAGGCATTGTGCTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

4.83

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019121)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44935
rosa_multiflora Rmu_co8073478.1_g000001 Rmu_sc0002435.1_g000021 Rmu_sc0008797.1_g000006 Rmu_sc0009015.1_g000006
rosa_roxburghii Rroxscaffold_5G00342900
rosa_rugosa Rorug03G0033700
rosa_samantha Rh3CG050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 2 cut(s) 12, 125
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw26I GTCTC 2 cut(s) 56, 68
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 155
AseI ATTAAT 1 cut(s) 230
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 94, 156
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 1 cut(s) 94
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 56, 68
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 2 cut(s) 57, 172
BfuAI ACCTGC 1 cut(s) 22
BglII AGATCT 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 94, 156
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 90
BseRI GAGGAG 2 cut(s) 43, 203
BshFI GGCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 198
BsmAI GTCTC 2 cut(s) 56, 68
BsmBI CGTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 198
Bsp143I GATC 1 cut(s) 176
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 49
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 2 cut(s) 56, 68
BstMBI GATC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 57, 172
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 1 cut(s) 157
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 94, 156
Csp6I GTAC 2 cut(s) 11, 124
CviJI RGCY 2 cut(s) 157, 248
CviKI_1 RGCY 2 cut(s) 157, 248
CviQI GTAC 2 cut(s) 11, 124
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 1 cut(s) 174
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 157
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 1 cut(s) 235
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 37, 73, 200
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 43, 139, 238
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 65
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 22, 27, 61, 77, 104
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 2 cut(s) 215, 220
MflI RGATCY 1 cut(s) 176
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 4 cut(s) 64, 147, 181, 208
MseI TTAA 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 92
NdeII GATC 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 96
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 94, 156
PspPPI RGGWCCY 1 cut(s) 94
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 2 cut(s) 12, 125
RsaNI GTAC 2 cut(s) 11, 124
SaqAI TTAA 1 cut(s) 230
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 2 cut(s) 94, 156
ScaI AGTACT 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 92
SetI ASST 4 cut(s) 16, 35, 68, 173
SfcI CTRYAG 2 cut(s) 57, 172
SinI GGWCC 1 cut(s) 94
Sse9I AATT 1 cut(s) 227
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 72, 186
TasI AATT 1 cut(s) 227
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 248, 257
VpaK11BI GGWCC 1 cut(s) 94
VspI ATTAAT 1 cut(s) 230
XspI CTAG 1 cut(s) 263
ZraI GACGTC 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.