Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0025848

Physical Location & Seq

Genomic Coordinates Reverse (-)

15536400 .. 15537090

Gene Structure 691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAGTTGTAGGGCTCGTCGATACGATCGCGTGCATATGTGGAACGCAAAAATCGGAGTTGGTACGATTAATAAAGCAAAGGCCACTAGGCCAACAAGGGAATTCCTTTCTTAAAGGAAATATTCTCTTGGTCCCTCGCTCTTTATCACTTCTCTCTCTCTTGTCTGCTTCAACATCCATCCTCCACATCGTTAACAATGGCGAGTCCGCAACTGCAGATCATACTTTTGAAGGAGGGCACGGACACTTCTCAAGGGAAGGCGCAGCTGGTCAGCAATATCAACGCCGCACGGCCGTCGCCGAGGTCGTCGGGACCACGCTCGGCCCCGCAGGCATGGACAAGCTTATTCACGAAGACAAGGGCAATGTCACCATCTCCAACGACGGCGCCACCATCATGAAGTTGCTTGATATCGTTCATCCCGCAGCCAAGATCCTTGTCGACATCGCCAAGTCTCGGGACTCGAGGTTGGTGATGGAACAACTACGCTTGTTCGCTTGCGGCGAGTTCTTGAACGAGGCCAAGCCTTTCGTGGAAGATGGGGTGCACCCACGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

187

Amino Acids

20.12

Weight (kDa)

7.8

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	100 - 186	1.6e-21	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0025848)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_5G00345220 Rroxscaffold_7G00166280 Rroxscaffold_7G00194720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	210, 289, 330, 426, 504
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	103, 558
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	174, 233, 517
AluBI	AGCT	2 cut(s)	269, 346
AluI	AGCT	2 cut(s)	269, 346
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	462
Alw44I	GTGCAC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	2 cut(s)	459, 466
AoxI	GGCC	5 cut(s)	83, 91, 294, 325, 522
ApaLI	GTGCAC	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	266, 428
ApoI	RAATTY	2 cut(s)	103, 558
AseI	ATTAAT	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	266, 392
AspS9I	GGNCC	3 cut(s)	133, 315, 326
AsuHPI	GGTGA	2 cut(s)	364, 487
AvaI	CYCGRG	2 cut(s)	459, 466
AvaII	GGWCC	2 cut(s)	133, 315
BaeGI	GKGCMC	2 cut(s)	243, 552
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	278, 440
BccI	CCATC	5 cut(s)	188, 383, 404, 472, 536
BceAI	ACGGC	3 cut(s)	281, 309, 403
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	393
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	4 cut(s)	267, 289, 429, 505
BlsI	GCNGC	4 cut(s)	268, 290, 430, 506
Bme18I	GGWCC	2 cut(s)	133, 315
BmeT110I	CYCGRG	2 cut(s)	459, 466
BmgT120I	GGNCC	3 cut(s)	133, 315, 326
BmiI	GGNNCC	4 cut(s)	135, 316, 328, 391
BpiI	GAAGAC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	3 cut(s)	176, 180, 421
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	373
BseSI	GKGCMC	2 cut(s)	243, 552
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	278, 440
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	2 cut(s)	30, 297
BshFI	GGCC	5 cut(s)	85, 93, 296, 327, 524
BshNI	GGYRCC	1 cut(s)	389
BsiEI	CGRYCG	2 cut(s)	30, 297
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	2 cut(s)	459, 466
BslFI	GGGAC	3 cut(s)	119, 328, 476
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	3 cut(s)	119, 328, 476
BsnI	GGCC	5 cut(s)	85, 93, 296, 327, 524
BsoBI	CYCGRG	2 cut(s)	459, 466
Bsp1286I	GDGCHC	3 cut(s)	18, 243, 552
Bsp143I	GATC	3 cut(s)	27, 220, 435
BspACI	CCGC	5 cut(s)	210, 289, 330, 426, 504
BspANI	GGCC	5 cut(s)	85, 93, 296, 327, 524
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	4 cut(s)	135, 316, 328, 391
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	3 cut(s)	27, 220, 435
BssNI	GRCGYC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	34, 334, 502
BstF5I	GGATG	3 cut(s)	176, 180, 421
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	2 cut(s)	266, 392
BstKTI	GATC	3 cut(s)	30, 223, 438
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	27, 220, 435
BstMCI	CGRYCG	2 cut(s)	30, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	2 cut(s)	243, 552
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	278, 440
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BstZI	CGGCCG	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	85, 93, 296, 327, 524
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	176, 180, 421
Cac8I	GCNNGC	3 cut(s)	34, 334, 502
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	2 cut(s)	266, 392
Cfr13I	GGNCC	3 cut(s)	133, 315, 326
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	2 cut(s)	337, 400
CviQI	GTAC	1 cut(s)	65
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	3 cut(s)	29, 222, 437
DpnII	GATC	3 cut(s)	27, 220, 435
EaeI	YGGCCR	1 cut(s)	294
EagI	CGGCCG	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	133, 315
Eco52I	CGGCCG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	459, 466
EcoRI	GAATTC	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	18
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
FaeI	CATG	2 cut(s)	340, 403
FaiI	YATR	5 cut(s)	38, 40, 225, 338, 401
FaqI	GGGAC	3 cut(s)	119, 328, 476
FatI	CATG	2 cut(s)	336, 399
FauI	CCCGC	2 cut(s)	337, 433
FauNDI	CATATG	1 cut(s)	38
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	267, 289, 429, 505
FokI	GGATG	3 cut(s)	163, 167, 408
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	267, 289, 429, 505
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	265, 391
GluI	GCNGC	4 cut(s)	267, 289, 429, 505
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	5 cut(s)	85, 93, 296, 327, 524
HhaI	GCGC	2 cut(s)	266, 392
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	340, 403
Hin6I	GCGC	2 cut(s)	264, 390
HinP1I	GCGC	2 cut(s)	264, 390
HincII	GTYRAC	2 cut(s)	196, 445
HindII	GTYRAC	2 cut(s)	196, 445
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	206, 464
HpaI	GTTAAC	1 cut(s)	196
HphI	GGTGA	2 cut(s)	364, 487
Hpy166II	GTNNAC	3 cut(s)	196, 445, 550
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	5 cut(s)	313, 353, 400, 461, 514
Hpy8I	GTNNAC	3 cut(s)	196, 445, 550
Hpy99I	CGWCG	4 cut(s)	23, 302, 314, 389
HpyAV	CCTTC	2 cut(s)	227, 254
HpyCH4V	TGCA	3 cut(s)	36, 218, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	340, 403
HspAI	GCGC	2 cut(s)	264, 390
KasI	GGCGCC	1 cut(s)	389
KspAI	GTTAAC	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	27, 220, 435
LpnPI	CCDG	2 cut(s)	255, 318
Lsp1109I	GCAGC	2 cut(s)	278, 440
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	29, 222, 437
MboI	GATC	3 cut(s)	27, 220, 435
MboII	GAAGA	2 cut(s)	368, 551
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	3 cut(s)	18, 243, 552
MluCI	AATT	2 cut(s)	103, 558
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	215, 458
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	6 cut(s)	147, 194, 230, 298, 462, 514
MseI	TTAA	3 cut(s)	71, 114, 195
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	333
NarI	GGCGCC	1 cut(s)	390
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	3 cut(s)	27, 220, 435
NlaIII	CATG	2 cut(s)	340, 403
NlaIV	GGNNCC	4 cut(s)	135, 316, 328, 391
NmeAIII	GCCGAG	2 cut(s)	303, 328
NmuCI	GTSAC	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	466
PagI	TCATGA	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 504
PkrI	GCNGC	4 cut(s)	268, 290, 430, 506
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	2 cut(s)	214, 458
PluTI	GGCGCC	1 cut(s)	393
PpsI	GAGTC	2 cut(s)	214, 458
PshBI	ATTAAT	1 cut(s)	71
PspN4I	GGNNCC	4 cut(s)	135, 316, 328, 391
PspPI	GGNCC	3 cut(s)	133, 315, 326
PspXI	VCTCGAGB	1 cut(s)	466
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	435
PvuI	CGATCG	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	71, 114, 195
SatI	GCNGC	4 cut(s)	267, 289, 429, 505
Sau3AI	GATC	3 cut(s)	27, 220, 435
Sau96I	GGNCC	3 cut(s)	133, 315, 326
SchI	GAGTC	2 cut(s)	215, 458
SduI	GDGCHC	3 cut(s)	18, 243, 552
SetI	ASST	4 cut(s)	271, 309, 348, 473
SfcI	CTRYAG	1 cut(s)	216
SfoI	GGCGCC	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	466
SinI	GGWCC	2 cut(s)	133, 315
SlaI	CTCGAG	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	253, 466
SmoI	CTYRAG	2 cut(s)	253, 466
Sse9I	AATT	2 cut(s)	103, 558
SsiI	CCGC	5 cut(s)	210, 289, 330, 426, 504
SspDI	GGCGCC	1 cut(s)	389
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	89
TaqI	TCGA	3 cut(s)	21, 444, 467
TasI	AATT	2 cut(s)	103, 558
TauI	GCSGC	2 cut(s)	291, 507
Tru1I	TTAA	3 cut(s)	71, 114, 195
Tru9I	TTAA	3 cut(s)	71, 114, 195
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	266, 428
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	3 cut(s)	17, 410, 416
TspGWI	ACGGA	1 cut(s)	258
VneI	GTGCAC	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	133, 315
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	2 cut(s)	103, 558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.