Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0025848

Physical Location & Seq

Genomic Coordinates Reverse (-)

7801505 .. 7803961

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTAAAAGATATTAGTTATCCTGTTGTGCTAGAAATGTCAAAGTTTTTATTCTTCCATCATTTCACTCTTGTTCTTGTATTGTCAGATCATACTTTTGAAGGAGGGCACGGACACTTCTCAAGGGAAGGCGCAGCTGGTCAGCAATATCAACGCCGCACGGCCGTCGCCGACGTCGTCGGGACCACGCTCGGCCCCGCAGGCATGGACAAGCTTATTCACGACGACAAGGGCAATGTCACCATCTCCAACGACGGCGCCACCATCATGAAGTTGCTTGATATCGTTCATCCTGCAGCCAAGATCCTCGTCGACATCGCCAAGTCTCGGGACTCGAGGTTGGTGATGGAACAACTACGGTTGTTCGCTTACGAGCGAGTTCTTGAACGAGGCCAAGCCTTTCGTGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

137

Amino Acids

15.31

Weight (kDa)

8.11

Isoelectric Point (pI)

20.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	56 - 112	1.5e-20	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025848)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_5G00345220 Rroxscaffold_7G00166280 Rroxscaffold_7G00194720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	157, 198
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	174, 258
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	101, 386
AluBI	AGCT	2 cut(s)	137, 214
AluI	AGCT	2 cut(s)	137, 214
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	327, 334
AoxI	GGCC	3 cut(s)	162, 193, 391
ApeKI	GCWGC	2 cut(s)	134, 296
AspLEI	GCGC	2 cut(s)	134, 260
AspS9I	GGNCC	2 cut(s)	183, 194
AsuHPI	GGTGA	2 cut(s)	232, 355
AvaI	CYCGRG	2 cut(s)	327, 334
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	146, 308
BccI	CCATC	4 cut(s)	66, 251, 272, 340
BceAI	ACGGC	3 cut(s)	149, 177, 271
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	135, 157, 297
BlsI	GCNGC	3 cut(s)	136, 158, 298
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	2 cut(s)	327, 334
BmgT120I	GGNCC	2 cut(s)	183, 194
BmiI	GGNNCC	3 cut(s)	184, 196, 259
BpuEI	CTTGAG	1 cut(s)	106
BsaHI	GRCGYC	2 cut(s)	174, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	146, 308
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	164, 195, 393
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	165
BsiHKCI	CYCGRG	2 cut(s)	327, 334
BslFI	GGGAC	2 cut(s)	196, 344
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	330
BsmFI	GGGAC	2 cut(s)	196, 344
BsnI	GGCC	3 cut(s)	164, 195, 393
BsoBI	CYCGRG	2 cut(s)	327, 334
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	88, 303
BspACI	CCGC	2 cut(s)	157, 198
BspANI	GGCC	3 cut(s)	164, 195, 393
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	184, 196, 259
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	241
BssMI	GATC	2 cut(s)	88, 303
BssNI	GRCGYC	2 cut(s)	174, 258
Bst4CI	ACNGT	1 cut(s)	360
BstACI	GRCGYC	2 cut(s)	174, 258
BstC8I	GCNNGC	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	134, 260
BstKTI	GATC	2 cut(s)	91, 306
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	88, 303
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	146, 308
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BstZI	CGGCCG	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	164, 195, 393
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	2 cut(s)	134, 260
Cfr13I	GGNCC	2 cut(s)	183, 194
CviAII	CATG	2 cut(s)	205, 268
CviJI	RGCY	7 cut(s)	137, 164, 195, 214, 299, 393, 398
CviKI_1	RGCY	7 cut(s)	137, 164, 195, 214, 299, 393, 398
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	90, 305
DpnII	GATC	2 cut(s)	88, 303
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
EclXI	CGGCCG	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	183
Eco52I	CGGCCG	1 cut(s)	162
Eco88I	CYCGRG	2 cut(s)	327, 334
EcoRV	GATATC	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	2 cut(s)	208, 271
FaiI	YATR	3 cut(s)	93, 206, 269
FaqI	GGGAC	2 cut(s)	196, 344
FatI	CATG	2 cut(s)	204, 267
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	135, 157, 297
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	135, 157, 297
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	133, 259
GluI	GCNGC	3 cut(s)	135, 157, 297
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	164, 195, 393
HhaI	GCGC	2 cut(s)	134, 260
Hin1I	GRCGYC	2 cut(s)	174, 258
Hin1II	CATG	2 cut(s)	208, 271
Hin6I	GCGC	2 cut(s)	132, 258
HinP1I	GCGC	2 cut(s)	132, 258
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	2 cut(s)	232, 355
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	181, 221, 268, 329, 383
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	7 cut(s)	170, 176, 179, 182, 227, 257, 314
HpyAV	CCTTC	2 cut(s)	95, 122
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	174, 258
Hsp92II	CATG	2 cut(s)	208, 271
HspAI	GCGC	2 cut(s)	132, 258
KasI	GGCGCC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	88, 303
LpnPI	CCDG	4 cut(s)	36, 123, 186, 306
Lsp1109I	GCAGC	2 cut(s)	146, 308
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	90, 305
MboI	GATC	2 cut(s)	88, 303
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	111
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	98, 317, 330, 383
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	258
NdeII	GATC	2 cut(s)	88, 303
NlaIII	CATG	2 cut(s)	208, 271
NlaIV	GGNNCC	3 cut(s)	184, 196, 259
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	334
PagI	TCATGA	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	136, 158, 298
PleI	GAGTC	1 cut(s)	326
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	184, 196, 259
PspPI	GGNCC	2 cut(s)	183, 194
PspXI	VCTCGAGB	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	311
SatI	GCNGC	3 cut(s)	135, 157, 297
Sau3AI	GATC	2 cut(s)	88, 303
Sau96I	GGNCC	2 cut(s)	183, 194
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	139, 177, 216, 341
SfcI	CTRYAG	1 cut(s)	294
SfoI	GGCGCC	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	121, 334
SmoI	CTYRAG	2 cut(s)	121, 334
SsiI	CCGC	2 cut(s)	157, 198
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	312, 335
TauI	GCSGC	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	134, 296
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	278, 284
TspGWI	ACGGA	1 cut(s)	126
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	32
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.