Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0025848

Physical Location & Seq

Genomic Coordinates Forward (+)

36748522 .. 36750958

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAGAGCCGCCGCCGACGACCGCCAATGGTGTCGGGGCCATGCTGCTCCGCTTCGTCTCATCAAGCCCAACCACTTTCCTAACTAGCACAAAGTCTGAAAATGATCGGAAGTGGTCGAAAAATTACCTTGAAGCCACGGAACTTCAATCTGAGTTCACCAGTCCAAGAATATCGAAGATTGGTCGTCTAGAACTCGAGATATCGGCGTTTACTCAAAATCGAACTCAAATCGAGTTAAGCTCACCGCCGCCGCTACGGCCGCGCCGCTGTGCAAGACCGCCACGGACAGATCATACTTCGAAGGAGGGCACGGACACTTCTCAAGGGAAGGCGCAGCTGGTCAGCAATATCAACGCCCGCACGGCCGTCGCCGACGTCGTCAAGACCACGCTCGGTCCCGCAGGCATGGACAAGCTTATTCACGACGACAAGGGCAATGTCACCATCTCCAACGACGGCGCCACCATCATGAAGTTGCTTGATATCGTTCATCCCGCAGCCAAGATCCTCGTCGACATCGCCAAGTCTCAAGACTCGAGGTTGGTGATGGAACAACTACGCTTGTTCGCTTGCAGGCGAGTTCTTGAACGAGGCCAAGCCTTTCGTGGAGGATGGGGTGCACCCACAGAATTTGATCAGGAGTTATCGAACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

219

Amino Acids

24.1

Weight (kDa)

9.39

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	124 - 180	1e-21	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025848)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_5G00345220 Rroxscaffold_7G00166280 Rroxscaffold_7G00194720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	265
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	2 cut(s)	260, 366
AcsI	RAATTY	1 cut(s)	632
AcyI	GRCGYC	2 cut(s)	378, 462
AgsI	TTSAA	3 cut(s)	134, 149, 590
AluBI	AGCT	3 cut(s)	243, 340, 418
AluI	AGCT	3 cut(s)	243, 340, 418
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	64, 534
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	502
Ama87I	CYCGRG	2 cut(s)	197, 538
AoxI	GGCC	4 cut(s)	39, 260, 366, 595
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	3 cut(s)	46, 337, 500
ApoI	RAATTY	1 cut(s)	632
AspLEI	GCGC	3 cut(s)	267, 337, 464
AspS9I	GGNCC	2 cut(s)	39, 398
AsuHPI	GGTGA	4 cut(s)	151, 237, 436, 559
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	197, 538
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	2 cut(s)	314, 625
BanI	GGYRCC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	33, 349, 512
BccI	CCATC	4 cut(s)	455, 476, 544, 609
BceAI	ACGGC	4 cut(s)	275, 353, 381, 475
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	64, 534
BfaI	CTAG	3 cut(s)	87, 191, 658
BfoI	RGCGCY	1 cut(s)	465
BglI	GCCNNNNNGGC	2 cut(s)	259, 365
BisI	GCNGC	9 cut(s)	11, 14, 47, 251, 254, 263, 268, 338, 501
BlsI	GCNGC	9 cut(s)	12, 15, 48, 252, 255, 264, 269, 339, 502
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	2 cut(s)	197, 538
BmgT120I	GGNCC	2 cut(s)	39, 398
BmiI	GGNNCC	3 cut(s)	40, 400, 463
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	309, 516
BsaHI	GRCGYC	2 cut(s)	378, 462
BsaJI	CCNNGG	2 cut(s)	138, 284
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	138, 284
BseGI	GGATG	2 cut(s)	493, 620
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	162
BseSI	GKGCMC	2 cut(s)	314, 625
BseX3I	CGGCCG	2 cut(s)	260, 366
BseXI	GCAGC	3 cut(s)	33, 349, 512
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	3 cut(s)	24, 263, 369
BshFI	GGCC	4 cut(s)	41, 262, 368, 597
BshNI	GGYRCC	1 cut(s)	461
BsiEI	CGRYCG	3 cut(s)	24, 263, 369
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	2 cut(s)	197, 538
BslFI	GGGAC	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	64, 534
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	4 cut(s)	41, 262, 368, 597
BsoBI	CYCGRG	2 cut(s)	197, 538
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	314, 625
Bsp143I	GATC	4 cut(s)	106, 292, 507, 637
BspANI	GGCC	4 cut(s)	41, 262, 368, 597
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	40, 400, 463
BspPI	GGATC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	138, 284
BssMI	GATC	4 cut(s)	106, 292, 507, 637
BssNI	GRCGYC	2 cut(s)	378, 462
BstACI	GRCGYC	2 cut(s)	378, 462
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	361, 406, 574, 578
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	2 cut(s)	138, 284
BstF5I	GGATG	2 cut(s)	493, 620
BstFNI	CGCG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	3 cut(s)	267, 337, 464
BstKTI	GATC	4 cut(s)	109, 295, 510, 640
BstMAI	GTCTC	2 cut(s)	64, 534
BstMBI	GATC	4 cut(s)	106, 292, 507, 637
BstMCI	CGRYCG	3 cut(s)	24, 263, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 262, 365
BstSLI	GKGCMC	2 cut(s)	314, 625
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	33, 349, 512
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BstZI	CGGCCG	2 cut(s)	260, 366
BsuRI	GGCC	4 cut(s)	41, 262, 368, 597
BtgI	CCRYGG	2 cut(s)	138, 284
BtgZI	GCGATG	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	493, 620
Cac8I	GCNNGC	4 cut(s)	361, 406, 574, 578
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	3 cut(s)	267, 337, 464
Cfr13I	GGNCC	2 cut(s)	39, 398
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	3 cut(s)	43, 409, 472
DdeI	CTNAG	1 cut(s)	153
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	4 cut(s)	108, 294, 509, 639
DpnII	GATC	4 cut(s)	106, 292, 507, 637
EaeI	YGGCCR	2 cut(s)	260, 366
EagI	CGGCCG	2 cut(s)	260, 366
EclXI	CGGCCG	2 cut(s)	260, 366
Eco32I	GATATC	2 cut(s)	204, 487
Eco47I	GGWCC	1 cut(s)	398
Eco52I	CGGCCG	2 cut(s)	260, 366
Eco88I	CYCGRG	2 cut(s)	197, 538
EcoRV	GATATC	2 cut(s)	204, 487
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	3 cut(s)	46, 412, 475
FaiI	YATR	4 cut(s)	44, 297, 410, 473
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	42, 408, 471
FauI	CCCGC	3 cut(s)	368, 409, 505
FbaI	TGATCA	1 cut(s)	637
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	9 cut(s)	11, 14, 47, 251, 254, 263, 268, 338, 501
FokI	GGATG	2 cut(s)	480, 627
Fsp4HI	GCNGC	9 cut(s)	11, 14, 47, 251, 254, 263, 268, 338, 501
FspBI	CTAG	3 cut(s)	87, 191, 658
GlaI	GCGC	3 cut(s)	266, 336, 463
GluI	GCNGC	9 cut(s)	11, 14, 47, 251, 254, 263, 268, 338, 501
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	41, 262, 368, 597
HhaI	GCGC	3 cut(s)	267, 337, 464
Hin1I	GRCGYC	2 cut(s)	378, 462
Hin1II	CATG	3 cut(s)	46, 412, 475
Hin6I	GCGC	3 cut(s)	265, 335, 462
HinP1I	GCGC	3 cut(s)	265, 335, 462
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	4 cut(s)	151, 237, 436, 559
Hpy166II	GTNNAC	4 cut(s)	159, 213, 517, 623
Hpy188I	TCNGA	3 cut(s)	100, 111, 154
Hpy188III	TCNNGA	8 cut(s)	191, 199, 385, 425, 472, 533, 587, 641
Hpy8I	GTNNAC	4 cut(s)	159, 213, 517, 623
Hpy99I	CGWCG	7 cut(s)	22, 374, 380, 383, 431, 461, 518
HpyAV	CCTTC	2 cut(s)	298, 325
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	275, 576, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 262, 365
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	2 cut(s)	378, 462
Hsp92II	CATG	3 cut(s)	46, 412, 475
HspAI	GCGC	3 cut(s)	265, 335, 462
KasI	GGCGCC	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	4 cut(s)	106, 292, 507, 637
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	175, 326, 390, 562, 626
Lsp1109I	GCAGC	3 cut(s)	33, 349, 512
MaeI	CTAG	3 cut(s)	87, 191, 658
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	108, 294, 509, 639
MboI	GATC	4 cut(s)	106, 292, 507, 637
MboII	GAAGA	1 cut(s)	190
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	314, 625
MluCI	AATT	2 cut(s)	124, 632
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	5 cut(s)	301, 521, 534, 587, 605
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	270, 340
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	259, 262, 365
NarI	GGCGCC	1 cut(s)	462
NdeII	GATC	4 cut(s)	106, 292, 507, 637
NlaIII	CATG	3 cut(s)	46, 412, 475
NlaIV	GGNNCC	3 cut(s)	40, 400, 463
NmuCI	GTSAC	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	302
PaeR7I	CTCGAG	2 cut(s)	197, 538
PagI	TCATGA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	9 cut(s)	12, 15, 48, 252, 255, 264, 269, 339, 502
PleI	GAGTC	1 cut(s)	530
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	530
PspN4I	GGNNCC	3 cut(s)	40, 400, 463
PspPI	GGNCC	2 cut(s)	39, 398
PspXI	VCTCGAGB	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	507
PsyI	GACNNNGTC	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	9 cut(s)	11, 14, 47, 251, 254, 263, 268, 338, 501
Sau3AI	GATC	4 cut(s)	106, 292, 507, 637
Sau96I	GGNCC	2 cut(s)	39, 398
SchI	GAGTC	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	314, 625
SetI	ASST	6 cut(s)	132, 245, 342, 381, 420, 545
SfoI	GGCGCC	1 cut(s)	463
Sfr274I	CTCGAG	2 cut(s)	197, 538
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	2 cut(s)	197, 538
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	4 cut(s)	197, 324, 531, 538
SmoI	CTYRAG	4 cut(s)	197, 324, 531, 538
Sse9I	AATT	2 cut(s)	124, 632
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	3 cut(s)	87, 191, 658
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	9 cut(s)	119, 176, 198, 223, 234, 302, 516, 539, 650
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	124, 632
TauI	GCSGC	6 cut(s)	13, 16, 253, 256, 265, 270
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	46, 337, 500
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	482, 488
TspGWI	ACGGA	3 cut(s)	155, 301, 329
Tth111I	GACNNNGTC	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XhoI	CTCGAG	2 cut(s)	197, 538
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	3 cut(s)	87, 191, 658
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.