Rroxscaffold_5G00345590
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0025850
Physical Location & Seq
Reverse (-)
16031424 .. 16032791
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345590.1

Sequence Viewer

Length: 294 bp
ATGCCGTCTTTTGAAGGATCCTCCCAAGAAACTACCTACCACCCTAATTGGAAGGTCATGGAGCTCATGACAGGTCAAGAGGGAACAGAAGGAAATTGGATATTGGTTTTGGAAGATGGTTTCTGCAACTTTGGAGCCTCAGCCTCACCAGCTTATGATCAGATCAACTCATCCACCGCTGACTGTCCAGGTGGCCCTTCTTCAGTTTATGTTGGTGATTTCGACATCACCAGTACTACCATGGACTGCAACCTGAGCTTTCTTGAAGATATCTACAACTATGGAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

4.05

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025850)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_5G00345590
rosa_samantha Rh4AG103400 Rh4CG111700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 12, 25
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 2 cut(s) 14, 266
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 64, 152, 258
AluI AGCT 3 cut(s) 64, 152, 258
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 2 cut(s) 12, 25
AoxI GGCC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 138, 220, 227
BamHI GGATCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 19, 136
BmrFI CCNGG 1 cut(s) 189
Bpu10I CCTNAGC 2 cut(s) 139, 254
BsaJI CCNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 153, 245
BseNI ACTGG 1 cut(s) 231
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 66
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 3 cut(s) 17, 157, 162
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 1 cut(s) 177
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 2 cut(s) 152, 246
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 19, 136
BspPI GGATC 2 cut(s) 12, 25
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 17, 157, 162
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 139, 254
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 3 cut(s) 20, 160, 165
BstMBI GATC 3 cut(s) 17, 157, 162
BstMWI GCNNNNNNNGC 2 cut(s) 149, 255
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 170
CciI TCATGA 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 3 cut(s) 58, 67, 241
CviJI RGCY 6 cut(s) 64, 137, 143, 152, 195, 258
CviKI_1 RGCY 6 cut(s) 64, 137, 143, 152, 195, 258
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 139, 254
DpnI GATC 3 cut(s) 19, 159, 164
DpnII GATC 3 cut(s) 17, 157, 162
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 61, 70, 244
FaiI YATR 6 cut(s) 59, 68, 156, 210, 242, 282
FatI CATG 3 cut(s) 57, 66, 240
FbaI TGATCA 1 cut(s) 157
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 3 cut(s) 61, 70, 244
HphI GGTGA 3 cut(s) 138, 220, 227
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 67, 77, 263
HpyAV CCTTC 4 cut(s) 8, 46, 83, 207
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 126, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 255
HpyF3I CTNAG 2 cut(s) 139, 254
Hsp92II CATG 3 cut(s) 61, 70, 244
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 17, 157, 162
LmnI GCTCC 2 cut(s) 61, 134
LpnPI CCDG 6 cut(s) 57, 162, 174, 201, 244, 266
MalI GATC 3 cut(s) 19, 159, 164
MboI GATC 3 cut(s) 17, 157, 162
MboII GAAGA 3 cut(s) 125, 192, 278
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 2 cut(s) 46, 94
MnlI CCTC 4 cut(s) 31, 73, 148, 154
MspA1I CMGCKG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 149, 255
NcoI CCATGG 1 cut(s) 240
NdeII GATC 3 cut(s) 17, 157, 162
NlaIII CATG 3 cut(s) 61, 70, 244
NlaIV GGNNCC 2 cut(s) 19, 136
PagI TCATGA 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 19, 136
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SacI GAGCTC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 17, 157, 162
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 66
SetI ASST 8 cut(s) 38, 57, 66, 76, 154, 193, 255, 260
Sse9I AATT 2 cut(s) 46, 94
SsiI CCGC 1 cut(s) 177
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 46, 94
TatI WGTACW 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.