Rroxscaffold_5G00348890

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
21400743 .. 21400991
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348890.1

Sequence Viewer

Length: 249 bp
ATGGATCAGAAAAAGCCCGAGGTTGCGGTGGTGGTGTCCCAGAGCAAGACACAAACGAATTTGTCTAGTGAGGTGGAAAACAAAATACGAGCAGATCAACATGGTGGATGTTCAACCAATTTCACTCAAAGTTACAAGGCAGGAGAGTTTGCGGAAAAGCACACTGGCGCTTCTTCATTCAGTCTTAAGGAAGATGATGAATTTGTTGACTTGGAGCAAGGGTATGGCGCTCAGCATCAGACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.04

Weight (kDa)

5.0

Isoelectric Point (pI)

18.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018808)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 152
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 58, 200
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 114
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 17
ApoI RAATTY 2 cut(s) 58, 200
AspLEI GCGC 2 cut(s) 170, 230
AvaI CYCGRG 1 cut(s) 17
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 2 cut(s) 171, 231
BfrI CTTAAG 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 17
BmsI GCATC 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 17
Bsp143I GATC 2 cut(s) 4, 94
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 2 cut(s) 26, 152
BspCNI CTCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 4, 94
BstAFI CTTAAG 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 113
BstH2I RGCGCY 2 cut(s) 171, 231
BstHHI GCGC 2 cut(s) 170, 230
BstKTI GATC 2 cut(s) 7, 97
BstMBI GATC 2 cut(s) 4, 94
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 162
CfoI GCGC 2 cut(s) 170, 230
CviAII CATG 1 cut(s) 101
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 6, 96
DpnII GATC 2 cut(s) 4, 94
Eco88I CYCGRG 1 cut(s) 17
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 225
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 100
FokI GGATG 1 cut(s) 120
FspBI CTAG 1 cut(s) 66
GlaI GCGC 2 cut(s) 169, 229
HaeII RGCGCY 2 cut(s) 171, 231
HhaI GCGC 2 cut(s) 170, 230
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 2 cut(s) 168, 228
HinP1I GCGC 2 cut(s) 168, 228
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 9, 240
Hpy8I GTNNAC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 2 cut(s) 168, 228
Kzo9I GATC 2 cut(s) 4, 94
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 3 cut(s) 53, 126, 150
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 6, 96
MboI GATC 2 cut(s) 4, 94
MboII GAAGA 2 cut(s) 165, 203
MluCI AATT 3 cut(s) 58, 118, 200
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 2 cut(s) 13, 64
MseI TTAA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 185
NdeII GATC 2 cut(s) 4, 94
NlaIII CATG 1 cut(s) 104
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 2 cut(s) 4, 94
SchI GAGTC 1 cut(s) 235
SetI ASST 2 cut(s) 24, 75
SfaNI GCATC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 58, 118, 200
SsiI CCGC 2 cut(s) 26, 152
SspMI CTAG 1 cut(s) 66
TasI AATT 3 cut(s) 58, 118, 200
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 165, 213
TspRI CASTG 1 cut(s) 169
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 2 cut(s) 58, 200
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.