Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0020714

Physical Location & Seq

Genomic Coordinates Forward (+)

48958341 .. 48966289

Gene Structure 7949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACCGACAAGGAACCCGCCATCTCCATGGATGGAAATGTCGAGGGTAGTCAAAAAAACAAAGGATCCCAATGCATGGCTGCAATTACCGGAAGCACTTCCCACCCACATGGAATCAATTTGGTCAATAATCCGCCTGTTGCTCCTACGGGTTACACATATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCGCAGATGCCACTTGGATGCAATTGCAAAGGAGCCATTCGTACTTACCTCGTGGTTCTCCCCGTGGTCGAGGCTTGCTTCAATTTCCACCCACGGCAGCTCATCAAGGAGGCGAACCTAGGTGCGGTCGAACCCGACTAGATTTTCCTCCTCCAAGAACGGCCAAGCACGAAACTAGTCTTGTTCTTCTCGTGGGAGCTTCCTCTTTCAATCCATGGTGGTGGTTTTGGACGATTCGCACAGAGCATAGTCAACTCGAGGTGAACAATGGATTCCGGCTTGTGAGCTTGATTCCGGCCGATCTAGGTCGAACCGGCCAAAACCTCATTAATCATCCACCGAATTTGTTTGAGCTTAACCGCTCGCTGTTAGCAAATCTACCCATTTTCGCACCCGGATGGCTGCATAGCTTGTCTTTGACAAAAGGAAAAGACGTACTTAACCAGTGCAAGGTAAAGCAGCTGGTGCAATTCAATGGGGAAGGCAAGAAAGGCGATGCAAGGCAAACCACGCCAAGCCATAGGTTGAGCAAGGCACGGCAGGGCATTCGGTTATATAGCATTTATCTTAAACAAATACCAGTTCTTGCCAATTTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

266

Amino Acids

29.46

Weight (kDa)

10.06

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020714)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032417
rosa_roxburghii	Rroxscaffold_1G00030330 Rroxscaffold_4G00283110 Rroxscaffold_5G00366870 Rroxscaffold_5G00366980
rosa_samantha	Rh2AG031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	561
AciI	CCGC	5 cut(s)	18, 134, 201, 324, 559
AclWI	GGATC	2 cut(s)	60, 73
AcoI	YGGCCR	3 cut(s)	360, 495, 514
AcsI	RAATTY	1 cut(s)	541
AfaI	GTAC	2 cut(s)	242, 636
AfiI	CCNNNNNNNGG	3 cut(s)	76, 323, 649
AgsI	TTSAA	4 cut(s)	176, 281, 409, 673
AhlI	ACTAGT	1 cut(s)	374
AluBI	AGCT	7 cut(s)	196, 299, 398, 486, 553, 609, 661
AluI	AGCT	7 cut(s)	196, 299, 398, 486, 553, 609, 661
AlwI	GGATC	2 cut(s)	60, 73
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	360, 495, 514
ApeKI	GCWGC	4 cut(s)	80, 296, 601, 658
ApoI	RAATTY	1 cut(s)	541
AseI	ATTAAT	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	97
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	455
AvrII	CCTAGG	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	65
BauI	CACGAG	2 cut(s)	249, 389
BbvI	GCAGC	4 cut(s)	67, 308, 588, 670
BccI	CCATC	3 cut(s)	26, 29, 591
BceAI	ACGGC	3 cut(s)	309, 375, 752
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BcnI	CCSGG	1 cut(s)	594
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	4 cut(s)	318, 338, 375, 503
BisI	GCNGC	4 cut(s)	81, 297, 602, 659
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	4 cut(s)	82, 298, 603, 660
Bme1390I	CCNGG	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	3 cut(s)	15, 67, 233
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	3 cut(s)	196, 207, 685
BpuMI	CCSGG	1 cut(s)	594
BsaJI	CCNNGG	5 cut(s)	27, 262, 291, 317, 413
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 323, 649
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	2 cut(s)	643, 779
BseDI	CCNNGG	5 cut(s)	27, 262, 291, 317, 413
BseGI	GGATG	4 cut(s)	37, 222, 532, 602
BseLI	CCNNNNNNNGG	3 cut(s)	76, 323, 649
BseNI	ACTGG	2 cut(s)	643, 779
BseRI	GAGGAG	1 cut(s)	339
BseX3I	CGGCCG	1 cut(s)	495
BseXI	GCAGC	4 cut(s)	67, 308, 588, 670
Bsh1285I	CGRYCG	2 cut(s)	328, 498
BshFI	GGCC	3 cut(s)	362, 497, 516
BsiEI	CGRYCG	2 cut(s)	328, 498
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	5 cut(s)	90, 475, 494, 513, 594
BslI	CCNNNNNNNGG	3 cut(s)	76, 323, 649
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	3 cut(s)	362, 497, 516
BsoBI	CYCGRG	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	65, 499
Bsp19I	CCATGG	2 cut(s)	27, 413
BspACI	CCGC	5 cut(s)	18, 134, 201, 324, 559
BspANI	GGCC	3 cut(s)	362, 497, 516
BspLI	GGNNCC	3 cut(s)	15, 67, 233
BspPI	GGATC	2 cut(s)	60, 73
BsrBI	CCGCTC	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	643, 779
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	5 cut(s)	27, 262, 291, 317, 413
BssMI	GATC	2 cut(s)	65, 499
BssSI	CACGAG	2 cut(s)	249, 389
BssT1I	CCWWGG	3 cut(s)	27, 317, 413
Bst2BI	CACGAG	2 cut(s)	249, 389
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	275, 563
BstDSI	CCRYGG	4 cut(s)	27, 262, 291, 413
BstF5I	GGATG	4 cut(s)	37, 222, 532, 602
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	68, 502
BstMBI	GATC	2 cut(s)	65, 499
BstMCI	CGRYCG	2 cut(s)	328, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	664, 690, 709
BstSCI	CCNGG	1 cut(s)	592
BstV1I	GCAGC	4 cut(s)	67, 308, 588, 670
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	3 cut(s)	28, 110, 420
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	362, 497, 516
BtgI	CCRYGG	4 cut(s)	27, 262, 291, 413
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	37, 222, 532, 602
BtsIMutI	CAGTG	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	275, 563
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	241, 635
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	4 cut(s)	28, 76, 110, 414
CviQI	GTAC	2 cut(s)	241, 635
DpnI	GATC	2 cut(s)	67, 501
DpnII	GATC	2 cut(s)	65, 499
EaeI	YGGCCR	3 cut(s)	360, 495, 514
EagI	CGGCCG	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	495
Eco130I	CCWWGG	3 cut(s)	27, 317, 413
Eco52I	CGGCCG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	455
EcoT14I	CCWWGG	3 cut(s)	27, 317, 413
EcoT22I	ATGCAT	1 cut(s)	77
ErhI	CCWWGG	3 cut(s)	27, 317, 413
FaeI	CATG	4 cut(s)	31, 79, 113, 417
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	4 cut(s)	27, 75, 109, 413
FauI	CCCGC	2 cut(s)	25, 208
Fnu4HI	GCNGC	4 cut(s)	81, 297, 602, 659
FokI	GGATG	4 cut(s)	44, 229, 519, 609
Fsp4HI	GCNGC	4 cut(s)	81, 297, 602, 659
FspBI	CTAG	4 cut(s)	318, 338, 375, 503
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	4 cut(s)	81, 297, 602, 659
HaeIII	GGCC	3 cut(s)	362, 497, 516
HapII	CCGG	5 cut(s)	90, 475, 494, 513, 594
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	4 cut(s)	31, 79, 113, 417
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	452
HindII	GTYRAC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	114, 433, 471, 490
HpaII	CCGG	5 cut(s)	90, 475, 494, 513, 594
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	452, 463
Hpy188I	TCNGA	1 cut(s)	800
Hpy8I	GTNNAC	2 cut(s)	452, 463
HpyAV	CCTTC	1 cut(s)	674
HpyCH4IV	ACGT	2 cut(s)	189, 633
HpyCH4V	TGCA	9 cut(s)	75, 83, 165, 220, 226, 604, 648, 667, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	664, 690, 709
HpySE526I	ACGT	2 cut(s)	189, 633
Hsp92II	CATG	4 cut(s)	31, 79, 113, 417
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	65, 499
LmnI	GCTCC	3 cut(s)	148, 231, 395
Lsp1109I	GCAGC	4 cut(s)	67, 308, 588, 670
LweI	GCATC	3 cut(s)	196, 207, 685
MaeI	CTAG	4 cut(s)	318, 338, 375, 503
MaeII	ACGT	2 cut(s)	189, 633
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	67, 501
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	2 cut(s)	65, 499
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	65
MluCI	AATT	7 cut(s)	84, 118, 221, 281, 541, 668, 790
MnlI	CCTC	9 cut(s)	37, 258, 263, 302, 357, 360, 412, 451, 533
Mph1103I	ATGCAT	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	4 cut(s)	528, 555, 639, 768
MslI	CAYNNNNRTG	5 cut(s)	26, 108, 215, 418, 595
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	5 cut(s)	90, 475, 494, 513, 594
MspR9I	CCNGG	1 cut(s)	594
MunI	CAATTG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	744
MwoI	GCNNNNNNNGC	3 cut(s)	664, 690, 709
NciI	CCSGG	1 cut(s)	594
NcoI	CCATGG	2 cut(s)	27, 413
NdeII	GATC	2 cut(s)	65, 499
NlaIII	CATG	4 cut(s)	31, 79, 113, 417
NlaIV	GGNNCC	3 cut(s)	15, 67, 233
NsbI	TGCGCA	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	114, 433, 471, 490
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	82, 298, 603, 660
PshBI	ATTAAT	1 cut(s)	528
PspN4I	GGNNCC	3 cut(s)	15, 67, 233
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	2 cut(s)	242, 636
RsaNI	GTAC	2 cut(s)	241, 635
RseI	CAYNNNNRTG	5 cut(s)	26, 108, 215, 418, 595
SaqAI	TTAA	4 cut(s)	528, 555, 639, 768
SatI	GCNGC	4 cut(s)	81, 297, 602, 659
Sau3AI	GATC	2 cut(s)	65, 499
ScrFI	CCNGG	1 cut(s)	594
SfaNI	GCATC	3 cut(s)	196, 207, 685
Sfr274I	CTCGAG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	5 cut(s)	26, 108, 215, 418, 595
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	7 cut(s)	84, 118, 221, 281, 541, 668, 790
SsiI	CCGC	5 cut(s)	18, 134, 201, 324, 559
SspMI	CTAG	4 cut(s)	318, 338, 375, 503
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	3 cut(s)	27, 317, 413
TaiI	ACGT	2 cut(s)	192, 636
TaqI	TCGA	5 cut(s)	42, 268, 328, 456, 508
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	7 cut(s)	84, 118, 221, 281, 541, 668, 790
TfiI	GAWTC	4 cut(s)	114, 433, 471, 490
Tru1I	TTAA	4 cut(s)	528, 555, 639, 768
Tru9I	TTAA	4 cut(s)	528, 555, 639, 768
TscAI	CASTG	1 cut(s)	650
TseI	GCWGC	4 cut(s)	80, 296, 601, 658
TspRI	CASTG	1 cut(s)	650
Van91I	CCANNNNNTGG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	455
XmaJI	CCTAGG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	4 cut(s)	318, 338, 375, 503
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.