Rroxscaffold_6G00404580

Nucleolar protein 6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
27072478 .. 27073597
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404580.1

Sequence Viewer

Length: 240 bp
ATGCTCGTGAGAGAGTTCCAGCTAGAATATTCACCTGCGCTCACCAAGTTTGTAGACGACGCCGTTTCGTCGATCAAAAATGCCATCGATATAAATCATAATTCCAGAAGACCTCAAGGTTACAGCTGTTTAGCTCCGGGATTCGTTAGAGATATTGGTGCAGACAAAGTTGAATTCGATTTCAAGAAGCCGAAATCTGTCAAAATTGGCGGCAGTTATGCTATCGAGTGCCTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

79

Amino Acids

8.8

Weight (kDa)

7.76

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019830)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 60
AgsI TTSAA 2 cut(s) 173, 184
AluBI AGCT 3 cut(s) 22, 126, 134
AluI AGCT 3 cut(s) 22, 126, 134
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 24, 34
BauI CACGAG 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 115
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 1 cut(s) 137
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 43
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 60
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BveI ACCTGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 1 cut(s) 68
CviJI RGCY 4 cut(s) 22, 126, 134, 190
CviKI_1 RGCY 4 cut(s) 22, 126, 134, 190
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 173
FaiI YATR 4 cut(s) 92, 99, 219, 238
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 211
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 24, 34
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 7, 105, 184
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 62, 73
HpyCH4V TGCA 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 60
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 32, 48, 118, 150
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 1 cut(s) 120
MluCI AATT 3 cut(s) 100, 173, 204
MnlI CCTC 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 138
NciI CCSGG 1 cut(s) 138
NdeII GATC 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 126
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 138
SetI ASST 6 cut(s) 24, 37, 115, 121, 128, 136
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 3 cut(s) 100, 173, 204
SsiI CCGC 1 cut(s) 210
SspI AATATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 4 cut(s) 71, 87, 177, 225
TasI AATT 3 cut(s) 100, 173, 204
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 141
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.