Rorug03G0161600

Nucleolar protein 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0019830
Physical Location & Seq
Reverse (-)
13399926 .. 13401229
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0161600.1

Sequence Viewer

Length: 855 bp
ATGGGCCGCGATGTTGAAGTTGGAGGGTTTGCTGCCAAGGACTACCATGACCCACCGCCAACACCATTGATCGATCCGGAAGAGTTCGGAAAATGGTCCTTTTACAGAGCCATCATTGCAGAGTTCATCGCTACGCTTTTGTTCTTGTACATCACTGTGCTCACTGTGATTGGATACAAGAGCCAGAGTGACACTCTCAAAGGTGGAGACCAATGTGGTGGTGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATCTCTGGAGGGCACATAAACCCTGCTGTGACATTTGGGCTGTTTTTGGCTAGGAAGGTGTCATTACCCAGAGCTGTATTGTATATTGTGGCTCAATCCTTGGGAGCAATATGTGGGTGTGGGCTTGTGAAATCATTCCAGAGTGCTTTGTACACCAACTATGGTGGTGGAGCTAATGGGCTAGCTGATGGGTACAGCAAAGGCACTGGATTGGCTGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCCAAGAGAAATGCAAGGGACTCCCATGTCCCAGTATTGGCACCACTACCAATTGGGTTTGCTGTGTTCATGGTTCACCTTGCCACAATCCCAATCACTGGCACAGGGATCAACCCGGCTCGAAGTTTCGGAGCTGCAGTGATATACAACAATGAGAAGGCTTGGAATGACCATTGGATCTTCTGGGTTGGACCCTTCATTGGTGCAGCCATTGCCGCTTTGTATCACCAAATGATATTGAGAGCAGGAGCTGCTAAGGCTTCGGGTTCTTTTAGGAGCTCTTCCAACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

284

Amino Acids

30.01

Weight (kDa)

8.61

Isoelectric Point (pI)

30.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 29 - 263 3.1e-85 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019830)

Species Orthologous Gene IDs
pyrus_communis pycom15g22810
rosa_roxburghii Rroxscaffold_6G00403890 Rroxscaffold_6G00404580
rosa_rugosa Rorug03G0161600
rosa_samantha Rh3AG211600 Rh3CG239000 Rh3DG238500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AccB1I GGYRCC 2 cut(s) 521, 601
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 9
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 3 cut(s) 7, 56, 777
AclWI GGATC 4 cut(s) 68, 554, 677, 746
AfaI GTAC 3 cut(s) 149, 443, 485
AfiI CCNNNNNNNGG 3 cut(s) 598, 659, 761
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 6 cut(s) 365, 464, 476, 695, 812, 840
AluI AGCT 6 cut(s) 365, 464, 476, 695, 812, 840
Alw21I GWGCWC 2 cut(s) 162, 842
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 4 cut(s) 68, 554, 677, 746
AlwNI CAGNNNCTG 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 2 cut(s) 4, 246
ApeKI GCWGC 5 cut(s) 32, 506, 695, 767, 812
Asp700I GAANNNNTTC 1 cut(s) 425
AspS9I GGNCC 4 cut(s) 4, 96, 246, 752
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 629, 779
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 2 cut(s) 96, 752
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 521, 601
BanII GRGCYC 1 cut(s) 842
BbsI GAAGAC 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 162, 842
BbvI GCAGC 5 cut(s) 19, 493, 682, 779, 799
BccI CCATC 2 cut(s) 119, 473
BciVI GTATCC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 342, 473
BfmI CTRYAG 1 cut(s) 696
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 7 cut(s) 7, 33, 507, 696, 768, 777, 813
BlsI GCNGC 7 cut(s) 8, 34, 508, 697, 769, 778, 814
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 2 cut(s) 96, 752
BmgT120I GGNCC 4 cut(s) 4, 96, 246, 752
BmiI GGNNCC 3 cut(s) 523, 603, 754
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 1 cut(s) 587
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 538
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 677
Bsa29I ATCGAT 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 36, 390
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 598, 659, 761
Bse1I ACTGG 3 cut(s) 502, 593, 664
Bse3DI GCAATG 3 cut(s) 114, 237, 771
BseAI TCCGGA 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 36, 390
BseLI CCNNNNNNNGG 3 cut(s) 598, 659, 761
BseMI GCAATG 3 cut(s) 114, 237, 771
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 3 cut(s) 502, 593, 664
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 5 cut(s) 19, 493, 682, 779, 799
BsgI GTGCAG 2 cut(s) 265, 786
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 6, 248
BshNI GGYRCC 2 cut(s) 521, 601
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 162, 842
BsiSI CCGG 2 cut(s) 77, 677
BslFI GGGAC 2 cut(s) 575, 593
BslI CCNNNNNNNGG 3 cut(s) 598, 659, 761
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 2 cut(s) 575, 593
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 2 cut(s) 6, 248
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 162, 306, 842
Bsp13I TCCGGA 1 cut(s) 76
Bsp1407I TGTACA 2 cut(s) 147, 441
Bsp143I GATC 6 cut(s) 69, 73, 261, 559, 669, 738
BspACI CCGC 3 cut(s) 7, 56, 777
BspANI GGCC 2 cut(s) 6, 248
BspCNI CTCAG 1 cut(s) 502
BspDI ATCGAT 1 cut(s) 72
BspEI TCCGGA 1 cut(s) 76
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 523, 603, 754
BspMAI CTGCAG 1 cut(s) 700
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 4 cut(s) 68, 554, 677, 746
BspQI GCTCTTC 1 cut(s) 847
BspT107I GGYRCC 2 cut(s) 521, 601
BspTNI GGTCTC 1 cut(s) 201
BsrDI GCAATG 3 cut(s) 114, 237, 771
BsrGI TGTACA 2 cut(s) 147, 441
BsrI ACTGG 3 cut(s) 502, 593, 664
BssECI CCNNGG 2 cut(s) 36, 390
BssMI GATC 6 cut(s) 69, 73, 261, 559, 669, 738
BssT1I CCWWGG 2 cut(s) 36, 390
Bst4CI ACNGT 3 cut(s) 157, 166, 544
Bst6I CTCTTC 2 cut(s) 75, 847
BstAPI GCANNNNNTGC 2 cut(s) 773, 812
BstAUI TGTACA 2 cut(s) 147, 441
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 510, 816
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 6 cut(s) 72, 76, 264, 562, 672, 741
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 6 cut(s) 69, 73, 261, 559, 669, 738
BstMWI GCNNNNNNNGC 6 cut(s) 116, 234, 773, 776, 812, 818
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 19, 493, 682, 779, 799
BstV2I GAAGAC 1 cut(s) 538
BstX2I RGATCY 1 cut(s) 738
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 738
Bsu15I ATCGAT 1 cut(s) 72
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 6, 248
BsuTUI ATCGAT 1 cut(s) 72
BtgZI GCGATG 2 cut(s) 24, 112
BtsI GCAGTG 2 cut(s) 282, 705
BtsIMutI CAGTG 8 cut(s) 153, 162, 282, 495, 540, 555, 657, 705
Cac8I GCNNGC 1 cut(s) 474
CaiI CAGNNNCTG 1 cut(s) 812
Cfr13I GGNCC 4 cut(s) 4, 96, 246, 752
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 148, 442, 484
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 4 cut(s) 47, 259, 587, 631
CviQI GTAC 3 cut(s) 148, 442, 484
DdeI CTNAG 2 cut(s) 510, 816
DpnI GATC 6 cut(s) 71, 75, 263, 561, 671, 740
DpnII GATC 6 cut(s) 69, 73, 261, 559, 669, 738
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
Eam1104I CTCTTC 2 cut(s) 75, 847
EarI CTCTTC 2 cut(s) 75, 847
Ecl136II GAGCTC 1 cut(s) 840
Eco130I CCWWGG 2 cut(s) 36, 390
Eco24I GRGCYC 1 cut(s) 842
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 96, 752
Eco53kI GAGCTC 1 cut(s) 840
EcoICRI GAGCTC 1 cut(s) 840
EcoT14I CCWWGG 2 cut(s) 36, 390
EcoT38I GRGCYC 1 cut(s) 842
ErhI CCWWGG 2 cut(s) 36, 390
FaeI CATG 4 cut(s) 50, 262, 590, 634
FaqI GGGAC 2 cut(s) 575, 593
FatI CATG 4 cut(s) 46, 258, 586, 630
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 7 cut(s) 7, 33, 507, 696, 768, 777, 813
FriOI GRGCYC 1 cut(s) 842
Fsp4HI GCNGC 7 cut(s) 7, 33, 507, 696, 768, 777, 813
FspBI CTAG 2 cut(s) 342, 473
GluI GCNGC 7 cut(s) 7, 33, 507, 696, 768, 777, 813
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 6, 248
HapII CCGG 2 cut(s) 77, 677
Hin1II CATG 4 cut(s) 50, 262, 590, 634
HinfI GANTC 2 cut(s) 291, 581
HpaII CCGG 2 cut(s) 77, 677
HphI GGTGA 2 cut(s) 629, 779
Hpy166II GTNNAC 4 cut(s) 277, 444, 538, 637
Hpy188I TCNGA 2 cut(s) 89, 692
Hpy188III TCNNGA 3 cut(s) 77, 297, 430
Hpy8I GTNNAC 4 cut(s) 277, 444, 538, 637
HpyAV CCTTC 3 cut(s) 340, 712, 766
HpyCH4III ACNGT 3 cut(s) 157, 166, 544
HpyCH4V TGCA 5 cut(s) 119, 282, 575, 698, 767
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 234, 773, 776, 812, 818
HpyF3I CTNAG 2 cut(s) 510, 816
Hsp92II CATG 4 cut(s) 50, 262, 590, 634
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 6 cut(s) 69, 73, 261, 559, 669, 738
LguI GCTCTTC 1 cut(s) 847
LmnI GCTCC 5 cut(s) 395, 461, 692, 809, 837
Lsp1109I GCAGC 5 cut(s) 19, 493, 682, 779, 799
MaeI CTAG 2 cut(s) 342, 473
MaeIII GTNAC 2 cut(s) 188, 319
MalI GATC 6 cut(s) 71, 75, 263, 561, 671, 740
MboI GATC 6 cut(s) 69, 73, 261, 559, 669, 738
MboII GAAGA 4 cut(s) 92, 538, 733, 834
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 3 cut(s) 162, 306, 842
MluCI AATT 1 cut(s) 612
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 2 cut(s) 17, 293
MroI TCCGGA 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 77, 677
MspR9I CCNGG 1 cut(s) 677
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 228
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 6 cut(s) 116, 234, 773, 776, 812, 818
NciI CCSGG 1 cut(s) 677
NdeII GATC 6 cut(s) 69, 73, 261, 559, 669, 738
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 4 cut(s) 50, 262, 590, 634
NlaIV GGNNCC 3 cut(s) 523, 603, 754
NmuCI GTSAC 2 cut(s) 188, 319
PciSI GCTCTTC 1 cut(s) 847
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 291
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 7 cut(s) 8, 34, 508, 697, 769, 778, 814
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 842
PspN4I GGNNCC 3 cut(s) 523, 603, 754
PspPI GGNCC 4 cut(s) 4, 96, 246, 752
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 1 cut(s) 738
RsaI GTAC 3 cut(s) 149, 443, 485
RsaNI GTAC 3 cut(s) 148, 442, 484
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 842
SapI GCTCTTC 1 cut(s) 847
SatI GCNGC 7 cut(s) 7, 33, 507, 696, 768, 777, 813
Sau3AI GATC 6 cut(s) 69, 73, 261, 559, 669, 738
Sau96I GGNCC 4 cut(s) 4, 96, 246, 752
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 3 cut(s) 162, 306, 842
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 2 cut(s) 96, 752
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 612
SsiI CCGC 3 cut(s) 7, 56, 777
SspMI CTAG 2 cut(s) 342, 473
SstI GAGCTC 1 cut(s) 842
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 2 cut(s) 36, 390
TaaI ACNGT 3 cut(s) 157, 166, 544
TaqI TCGA 2 cut(s) 72, 682
TasI AATT 1 cut(s) 612
TatI WGTACW 2 cut(s) 147, 441
TauI GCSGC 2 cut(s) 9, 779
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 8 cut(s) 160, 169, 289, 502, 547, 562, 664, 705
TseFI GTSAC 2 cut(s) 188, 319
TseI GCWGC 5 cut(s) 32, 506, 695, 767, 812
Tsp45I GTSAC 2 cut(s) 188, 319
TspDTI ATGAA 3 cut(s) 115, 619, 748
TspRI CASTG 8 cut(s) 160, 169, 289, 502, 547, 562, 664, 705
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 96, 752
XmiI GTMKAC 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 2 cut(s) 342, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.