Rh3DG238500

Nucleolar protein 6-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
22906352 .. 22906762
411 bp
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UTR
Exon/CDS
Intron
Rh3DG238500.1

Sequence Viewer

Length: 237 bp
ATGCTCGTGAGAGAGTTCCAGCTAGAATATTCACCTGCGCTCACCAAGTTTGTAGACGACGCCGTTTCGTCGATCAAAAAAGCCATCGATATATATAATTCCAGAAGACCTCAAGGTTACAGCTGTTTAGCTCCTGGATTCGTTAAAGATATTGGTGCAGACAAAGTTGAATTCGATTTCAAGAAGCCGAAATCTGTCAAAATTGGCGGCAGTTATGCTATCGAGTGCCTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

78

Amino Acids

8.69

Weight (kDa)

8.58

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019830)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 60
AgsI TTSAA 2 cut(s) 170, 181
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 3 cut(s) 22, 123, 131
AluI AGCT 3 cut(s) 22, 123, 131
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 24, 34
BauI CACGAG 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 112
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 135
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 87
BsgI GTGCAG 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 87
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 43
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 60
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BveI ACCTGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 1 cut(s) 68
CviJI RGCY 5 cut(s) 22, 83, 123, 131, 187
CviKI_1 RGCY 5 cut(s) 22, 83, 123, 131, 187
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 133
FaiI YATR 5 cut(s) 92, 94, 96, 216, 235
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 208
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 138
HphI GGTGA 2 cut(s) 24, 34
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 7, 102, 181
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 62, 73
HpyCH4V TGCA 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 60
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 32, 48, 115, 120, 147
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 1 cut(s) 117
MluCI AATT 3 cut(s) 97, 170, 201
MnlI CCTC 1 cut(s) 120
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeII GATC 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 135
SetI ASST 6 cut(s) 24, 37, 112, 118, 125, 133
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 3 cut(s) 97, 170, 201
SsiI CCGC 1 cut(s) 207
SspI AATATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 133
TaqI TCGA 4 cut(s) 71, 87, 174, 222
TasI AATT 3 cut(s) 97, 170, 201
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
XapI RAATTY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.