Rroxscaffold_6G00409350
NAC Family

Inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0025457
Physical Location & Seq
Forward (+)
31858554 .. 31859048
495 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00409350.1

Sequence Viewer

Length: 279 bp
ATGACCCGTTTCAATGACCGGAGGCACGAACCCTTATCTTCCCAAGTACTCGAACCGAATGCCCATAATCTCGCCATAGCTAAGCTTCTTCAAACTCGGAGCTCGACAACGACGGGGAACCGGTTGTATGTGTACTCGCTTCACCTTCCCGGTGTTGGGCTTATGGGTCCGATTCCACCCAACACCCTCGGCCACCGAGTCGGCTCCGAGTTCGAGTCTTCGCAGATTTCGCCAATAGTGCTTCTCTCCAAGGGAATTGGCTTGATCCGGAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

92

Amino Acids

10.07

Weight (kDa)

10.83

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025457)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001606.1_g000004 Rmu_ssc0000174.1_g000034
rosa_roxburghii Rroxscaffold_6G00409350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 267
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 190
AfaI GTAC 2 cut(s) 48, 134
AfiI CCNNNNNNNGG 2 cut(s) 155, 156
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 2 cut(s) 13, 92
AluBI AGCT 3 cut(s) 80, 85, 102
AluI AGCT 3 cut(s) 80, 85, 102
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 1 cut(s) 190
AsiGI ACCGGT 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BcnI CCSGG 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 81
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 119, 168, 205
BmrFI CCNGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 187, 249
BsaWI WCCGGW 3 cut(s) 18, 120, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 156
Bse118I RCCGGY 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 187, 249
BseLI CCNNNNNNNGG 2 cut(s) 155, 156
BshFI GGCC 1 cut(s) 192
BshTI ACCGGT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 4 cut(s) 19, 121, 150, 268
BslI CCNNNNNNNGG 2 cut(s) 155, 156
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 264
Bsp1720I GCTNAGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 119, 168, 205
BspPI GGATC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 187, 249
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 229, 238
BstSCI CCNGG 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 47, 133
CspAI ACCGGT 1 cut(s) 120
CviJI RGCY 7 cut(s) 80, 85, 102, 160, 192, 204, 261
CviKI_1 RGCY 7 cut(s) 80, 85, 102, 160, 192, 204, 261
CviQI GTAC 2 cut(s) 47, 133
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 4 cut(s) 66, 77, 129, 164
FriOI GRGCYC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 192
HapII CCGG 4 cut(s) 19, 121, 150, 268
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 3 cut(s) 172, 198, 215
HpaII CCGG 4 cut(s) 19, 121, 150, 268
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 99, 171, 208
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 238
HpyF3I CTNAG 1 cut(s) 81
Kpn2I TCCGGA 1 cut(s) 267
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 2 cut(s) 99, 209
LpnPI CCDG 3 cut(s) 32, 134, 163
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 3 cut(s) 30, 80, 210
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 255
MlyI GAGTC 2 cut(s) 207, 224
MnlI CCTC 3 cut(s) 15, 197, 266
MroI TCCGGA 1 cut(s) 267
MspI CCGG 4 cut(s) 19, 121, 150, 268
MspR9I CCNGG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 229, 238
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 264
NlaIV GGNNCC 3 cut(s) 119, 168, 205
NmeAIII GCCGAG 1 cut(s) 168
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 172
PinAI ACCGGT 1 cut(s) 120
PleI GAGTC 2 cut(s) 206, 223
PpsI GAGTC 2 cut(s) 206, 223
Psp124BI GAGCTC 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 119, 168, 205
PspPI GGNCC 1 cut(s) 167
RsaI GTAC 2 cut(s) 48, 134
RsaNI GTAC 2 cut(s) 47, 133
SacI GAGCTC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 167
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 2 cut(s) 207, 224
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 104
SetI ASST 5 cut(s) 82, 87, 104, 147, 277
SinI GGWCC 1 cut(s) 167
Sse9I AATT 1 cut(s) 255
SstI GAGCTC 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 3 cut(s) 51, 104, 213
TasI AATT 1 cut(s) 255
TatI WGTACW 2 cut(s) 46, 132
TfiI GAWTC 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.