Rroxscaffold_6G00413430

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
35790447 .. 35792923
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413430.1

Sequence Viewer

Length: 1422 bp
ATGCCTACAAAAGCAATGAGAAGCCTCTTCTTTCACCCAAAAGCTCCATCTTTTTCATTTTCATCTCACTCTTCCCCATCAAGAAGCTCAATTTCATTCCCAACCCCACAGCGCAGCAGGACCGCTGGTTCTAACATTTCGGAGACGATGGTGGACGAGATGTTGGAAAACGCAGCCGTTATGATCATGAAATGGAACCCTGAATCTTCTGCATTCGGGAGACTCACCTCCTTATTCTACGAGAGCAAAAAGGAAGCTCAACAATACATCAAGTGCGTGAACGATCTCCAGAGAGTCATGCAATTCTTGGTCTCAGACGATCCCACCTCCGAAAAATTGGTTCATGCCCAGCGCCTCATGCAGATTGCCATGAAGCGGTTACAGAAGGAATTTTACCAGATTCTTTCTATGAACCGAGCTCACTTGGACCCCGAATCAGTTTCGTCCCGGTCCCGGTCTTCCCGCGCCACTTCCAGCACATCAGATGACGACATCGATGACGGAGAAGACAAGGATTTTGCAGCAGATACCATCTCCGATGTGGAACAAGCTTCTTCCATGGCCATGACTGACCTCAAATCCATAGCGGAGTGCATGATCTCCTCCGGTTACGCAAAGGAGTGCGTTCACATCTACAATCTAATAAGGAAATCAATCATAGACGAAGCTATGTGTATAAGCTCTCGGAGTGGAGAGAATTTCTCTTCTCAGATCAATAAGATGGATAGGGAAATTCTCGAGCTCAAAATCCAGAATTGGCTGAATGCGGTGAAGGTGTCTATGACAACACTCTTTTACGGGGAGCGAATCCTCTGCGACCACGTTTTCGCCGTCTCAAAATCCATCAGAGAGTCTTGCTTCGCTCACATAGCCAGAGAAGCCGCCACTCTTCTCTTCGGTCTTCCTCAAGTACTCGTCTCGAAGAGCAAGAAGAACTATCCAGAAGAAATCATCTTCCGTCTTCTCGACATGTACACCGCAATTTCCGAATACTGGCCGGAGATAGAATCTATCTTCGGTTTTGAGTCAACCGCCACAGCTCGGTTTGAAGCGCTCAACTCGCTCATCCGACTCAGTGAGTCAGTTCGCTCAATGCTTTCCGAATTTGAGACTTCTATTCAGAAAGACTCGTCAAAATCCCCGGTCACCGGTGGCGGAGTCCATCCTCTGACTCTCCGCGTGATGAGTCACCTCTCTCTCCTCACCGATTACAGCAACGTGCTGGCCGACATTTTCATTGATTGGACACCTCCGGCCAAGCTGCCCCTGCCGGAGTCTGAAGACTCGTCGGTGGCGGCTGTATCTCTCCGTATGGTTTGGCTCATCCTTGTCCTTGTCTGCAAGCTCTCGATGACAAAGCCAAACAGTACAAGGAAGTGTCCTTATCGTACCTCTTCCTCGCAAACAATCTGCAACACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

53.15

Weight (kDa)

6.19

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_N PF20669 55 - 136 6.2e-20 Exocyst complex component Exo70 N-terminal
Exo70_C PF03081 251 - 451 1.3e-49 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 465, 1179
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 4 cut(s) 561, 995, 1224, 1254
AcsI RAATTY 4 cut(s) 389, 697, 732, 1103
AcuI CTGAAG 1 cut(s) 1299
AfaI GTAC 4 cut(s) 912, 974, 1369, 1390
AfeI AGCGCT 1 cut(s) 1053
AfiI CCNNNNNNNGG 5 cut(s) 375, 453, 993, 1041, 1148
AflIII ACRYGT 2 cut(s) 969, 1416
AgeI ACCGGT 1 cut(s) 1148
AgsI TTSAA 1 cut(s) 1049
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
Alw21I GWGCWC 2 cut(s) 421, 744
Alw26I GTCTC 6 cut(s) 137, 214, 316, 838, 922, 1103
AlwI GGATC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 737
Aor51HI AGCGCT 1 cut(s) 1053
AoxI GGCC 4 cut(s) 561, 995, 1224, 1254
ApeKI GCWGC 4 cut(s) 114, 173, 521, 1261
ApoI RAATTY 4 cut(s) 389, 697, 732, 1103
ArsI GACNNNNNNTTYG 4 cut(s) 500, 532, 809, 841
AsiGI ACCGGT 1 cut(s) 1148
AspLEI GCGC 4 cut(s) 114, 354, 467, 1054
AspS9I GGNCC 3 cut(s) 120, 427, 450
AsuC2I CCSGG 3 cut(s) 448, 454, 1142
AsuHPI GGTGA 6 cut(s) 26, 217, 781, 1138, 1181, 1195
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 3 cut(s) 120, 427, 450
BalI TGGCCA 1 cut(s) 563
BanII GRGCYC 2 cut(s) 421, 744
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BbsI GAAGAC 5 cut(s) 450, 513, 893, 953, 1287
Bbv12I GWGCWC 2 cut(s) 421, 744
BbvI GCAGC 4 cut(s) 126, 185, 533, 1248
BccI CCATC 7 cut(s) 55, 85, 142, 539, 715, 851, 1170
BceAI ACGGC 2 cut(s) 161, 815
BcgI CGANNNNNNTGC 2 cut(s) 795, 829
BclI TGATCA 1 cut(s) 183
BcnI CCSGG 3 cut(s) 448, 454, 1142
BcoDI GTCTC 6 cut(s) 137, 214, 316, 838, 922, 1103
BfoI RGCGCY 2 cut(s) 355, 1055
BisI GCNGC 6 cut(s) 115, 174, 522, 882, 1262, 1296
BlsI GCNGC 6 cut(s) 116, 175, 523, 883, 1263, 1297
BmcAI AGTACT 1 cut(s) 912
Bme1390I CCNGG 3 cut(s) 448, 454, 1142
Bme18I GGWCC 3 cut(s) 120, 427, 450
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 3 cut(s) 120, 427, 450
BmiI GGNNCC 3 cut(s) 197, 429, 452
BmrFI CCNGG 3 cut(s) 448, 454, 1142
BpiI GAAGAC 5 cut(s) 450, 513, 893, 953, 1287
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 891
BpuMI CCSGG 3 cut(s) 448, 454, 1142
Bsa29I ATCGAT 1 cut(s) 495
BsaAI YACGTR 1 cut(s) 1419
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 558, 1140
BsaWI WCCGGW 2 cut(s) 605, 1148
Bsc4I CCNNNNNNNGG 5 cut(s) 375, 453, 993, 1041, 1148
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 1 cut(s) 998
Bse3DI GCAATG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 558, 1140
BseGI GGATG 3 cut(s) 1065, 1162, 1323
BseLI CCNNNNNNNGG 5 cut(s) 375, 453, 993, 1041, 1148
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 3 cut(s) 327, 722, 1087
BseNI ACTGG 1 cut(s) 998
BseRI GAGGAG 2 cut(s) 592, 1190
BseXI GCAGC 4 cut(s) 126, 185, 533, 1248
BseYI CCCAGC 1 cut(s) 348
Bsh1236I CGCG 2 cut(s) 465, 1179
BshFI GGCC 4 cut(s) 563, 997, 1226, 1256
BshTI ACCGGT 1 cut(s) 1148
BshVI ATCGAT 1 cut(s) 495
BsiHKAI GWGCWC 2 cut(s) 421, 744
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 8 cut(s) 448, 454, 606, 998, 1142, 1149, 1253, 1271
BslFI GGGAC 2 cut(s) 430, 436
BslI CCNNNNNNNGG 5 cut(s) 375, 453, 993, 1041, 1148
BsmAI GTCTC 6 cut(s) 137, 214, 316, 838, 922, 1103
BsmBI CGTCTC 3 cut(s) 137, 838, 922
BsmFI GGGAC 2 cut(s) 430, 436
BsmI GAATGC 2 cut(s) 212, 769
BsnI GGCC 4 cut(s) 563, 997, 1226, 1256
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 421, 744
Bsp1407I TGTACA 1 cut(s) 972
Bsp143I GATC 5 cut(s) 183, 283, 319, 597, 711
Bsp19I CCATGG 1 cut(s) 558
BspANI GGCC 4 cut(s) 563, 997, 1226, 1256
BspCNI CTCAG 3 cut(s) 326, 721, 1086
BspDI ATCGAT 1 cut(s) 495
BspFNI CGCG 2 cut(s) 465, 1179
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 197, 429, 452
BspPI GGATC 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 1148
BsrGI TGTACA 1 cut(s) 972
BsrI ACTGG 1 cut(s) 998
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 2 cut(s) 558, 1140
BssMI GATC 5 cut(s) 183, 283, 319, 597, 711
BssT1I CCWWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 1367
Bst6I CTCTTC 7 cut(s) 32, 76, 709, 894, 899, 917, 1399
BstAUI TGTACA 1 cut(s) 972
BstBAI YACGTR 1 cut(s) 1419
BstC8I GCNNGC 2 cut(s) 1224, 1343
BstDEI CTNAG 3 cut(s) 313, 708, 1073
BstDSI CCRYGG 1 cut(s) 558
BstEII GGTNACC 1 cut(s) 1144
BstF5I GGATG 3 cut(s) 1065, 1162, 1323
BstFNI CGCG 2 cut(s) 465, 1179
BstH2I RGCGCY 2 cut(s) 355, 1055
BstHHI GCGC 4 cut(s) 114, 354, 467, 1054
BstKTI GATC 5 cut(s) 186, 286, 322, 600, 714
BstMAI GTCTC 6 cut(s) 137, 214, 316, 838, 922, 1103
BstMBI GATC 5 cut(s) 183, 283, 319, 597, 711
BstMWI GCNNNNNNNGC 5 cut(s) 358, 869, 878, 1060, 1267
BstNSI RCATGY 1 cut(s) 973
BstPI GGTNACC 1 cut(s) 1144
BstSCI CCNGG 3 cut(s) 446, 452, 1140
BstUI CGCG 2 cut(s) 465, 1179
BstV1I GCAGC 4 cut(s) 126, 185, 533, 1248
BstV2I GAAGAC 5 cut(s) 450, 513, 893, 953, 1287
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 4 cut(s) 563, 997, 1226, 1256
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 3 cut(s) 1065, 1162, 1323
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 2 cut(s) 1224, 1343
CciI TCATGA 1 cut(s) 186
CfoI GCGC 4 cut(s) 114, 354, 467, 1054
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 3 cut(s) 120, 427, 450
ClaI ATCGAT 1 cut(s) 495
Csp6I GTAC 4 cut(s) 911, 973, 1368, 1389
CspAI ACCGGT 1 cut(s) 1148
CviAII CATG 9 cut(s) 187, 298, 344, 358, 370, 559, 565, 595, 970
CviQI GTAC 4 cut(s) 911, 973, 1368, 1389
DdeI CTNAG 3 cut(s) 313, 708, 1073
DpnI GATC 5 cut(s) 185, 285, 321, 599, 713
DpnII GATC 5 cut(s) 183, 283, 319, 597, 711
EaeI YGGCCR 4 cut(s) 561, 995, 1224, 1254
Eam1104I CTCTTC 7 cut(s) 32, 76, 709, 894, 899, 917, 1399
EarI CTCTTC 7 cut(s) 32, 76, 709, 894, 899, 917, 1399
EciI GGCGGA 1 cut(s) 1170
Ecl136II GAGCTC 2 cut(s) 419, 742
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 2 cut(s) 421, 744
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 3 cut(s) 120, 427, 450
Eco47III AGCGCT 1 cut(s) 1053
Eco53kI GAGCTC 2 cut(s) 419, 742
Eco57I CTGAAG 1 cut(s) 1299
Eco88I CYCGRG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 1144
EcoICRI GAGCTC 2 cut(s) 419, 742
EcoO65I GGTNACC 1 cut(s) 1144
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 2 cut(s) 421, 744
ErhI CCWWGG 1 cut(s) 558
Esp3I CGTCTC 3 cut(s) 137, 838, 922
FaeI CATG 9 cut(s) 190, 301, 347, 361, 373, 562, 568, 598, 973
FaqI GGGAC 2 cut(s) 430, 436
FatI CATG 9 cut(s) 186, 297, 343, 357, 369, 558, 564, 594, 969
FauI CCCGC 1 cut(s) 470
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 6 cut(s) 115, 174, 522, 882, 1262, 1296
FokI GGATG 3 cut(s) 1052, 1149, 1310
FriOI GRGCYC 2 cut(s) 421, 744
Fsp4HI GCNGC 6 cut(s) 115, 174, 522, 882, 1262, 1296
GlaI GCGC 4 cut(s) 113, 353, 466, 1053
GluI GCNGC 6 cut(s) 115, 174, 522, 882, 1262, 1296
GsaI CCCAGC 1 cut(s) 352
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 2 cut(s) 355, 1055
HaeIII GGCC 4 cut(s) 563, 997, 1226, 1256
HapII CCGG 8 cut(s) 448, 454, 606, 998, 1142, 1149, 1253, 1271
HhaI GCGC 4 cut(s) 114, 354, 467, 1054
Hin1II CATG 9 cut(s) 190, 301, 347, 361, 373, 562, 568, 598, 973
Hin6I GCGC 4 cut(s) 112, 352, 465, 1052
HinP1I GCGC 4 cut(s) 112, 352, 465, 1052
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HindIII AAGCTT 1 cut(s) 549
HpaII CCGG 8 cut(s) 448, 454, 606, 998, 1142, 1149, 1253, 1271
HphI GGTGA 6 cut(s) 26, 217, 781, 1138, 1181, 1195
Hpy166II GTNNAC 5 cut(s) 154, 280, 628, 975, 1029
Hpy8I GTNNAC 5 cut(s) 154, 280, 628, 975, 1029
Hpy99I CGWCG 1 cut(s) 1291
HpyAV CCTTC 2 cut(s) 379, 766
HpyCH4III ACNGT 1 cut(s) 1367
HpyCH4IV ACGT 3 cut(s) 822, 1218, 1418
HpyCH4V TGCA 7 cut(s) 212, 301, 361, 521, 594, 1341, 1413
HpyF10VI GCNNNNNNNGC 5 cut(s) 358, 869, 878, 1060, 1267
HpyF3I CTNAG 3 cut(s) 313, 708, 1073
HpySE526I ACGT 3 cut(s) 822, 1218, 1418
Hsp92II CATG 9 cut(s) 190, 301, 347, 361, 373, 562, 568, 598, 973
HspAI GCGC 4 cut(s) 112, 352, 465, 1052
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 5 cut(s) 183, 283, 319, 597, 711
LguI GCTCTTC 1 cut(s) 917
LmnI GCTCC 2 cut(s) 49, 802
Lsp1109I GCAGC 4 cut(s) 126, 185, 533, 1248
MaeII ACGT 3 cut(s) 822, 1218, 1418
MaeIII GTNAC 4 cut(s) 378, 608, 1144, 1187
MalI GATC 5 cut(s) 185, 285, 321, 599, 713
MboI GATC 5 cut(s) 183, 283, 319, 597, 711
MhlI GDGCHC 2 cut(s) 421, 744
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 9 cut(s) 90, 302, 335, 389, 697, 732, 754, 981, 1103
MluNI TGGCCA 1 cut(s) 563
MmeI TCCRAC 2 cut(s) 144, 1093
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 8 cut(s) 448, 454, 606, 998, 1142, 1149, 1253, 1271
MspR9I CCNGG 3 cut(s) 448, 454, 1142
Mva1269I GAATGC 2 cut(s) 212, 769
MvnI CGCG 2 cut(s) 465, 1179
MwoI GCNNNNNNNGC 5 cut(s) 358, 869, 878, 1060, 1267
NciI CCSGG 3 cut(s) 448, 454, 1142
NcoI CCATGG 1 cut(s) 558
NdeII GATC 5 cut(s) 183, 283, 319, 597, 711
NlaIII CATG 9 cut(s) 190, 301, 347, 361, 373, 562, 568, 598, 973
NlaIV GGNNCC 3 cut(s) 197, 429, 452
NmuCI GTSAC 2 cut(s) 1144, 1187
NspI RCATGY 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 737
PagI TCATGA 1 cut(s) 186
PciI ACATGT 1 cut(s) 969
PciSI GCTCTTC 1 cut(s) 917
PcsI WCGNNNNNNNCGW 2 cut(s) 828, 1224
PctI GAATGC 2 cut(s) 212, 769
PfeI GAWTC 5 cut(s) 203, 400, 434, 807, 1007
PinAI ACCGGT 1 cut(s) 1148
PkrI GCNGC 6 cut(s) 116, 175, 523, 883, 1263, 1297
Ppu21I YACGTR 1 cut(s) 1419
PscI ACATGT 1 cut(s) 969
Psp124BI GAGCTC 2 cut(s) 421, 744
PspEI GGTNACC 1 cut(s) 1144
PspFI CCCAGC 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 197, 429, 452
PspPI GGNCC 3 cut(s) 120, 427, 450
RsaI GTAC 4 cut(s) 912, 974, 1369, 1390
RsaNI GTAC 4 cut(s) 911, 973, 1368, 1389
RseI CAYNNNNRTG 1 cut(s) 563
SacI GAGCTC 2 cut(s) 421, 744
SapI GCTCTTC 1 cut(s) 917
SatI GCNGC 6 cut(s) 115, 174, 522, 882, 1262, 1296
Sau3AI GATC 5 cut(s) 183, 283, 319, 597, 711
Sau96I GGNCC 3 cut(s) 120, 427, 450
ScaI AGTACT 1 cut(s) 912
ScrFI CCNGG 3 cut(s) 448, 454, 1142
SduI GDGCHC 2 cut(s) 421, 744
Sfr274I CTCGAG 1 cut(s) 737
SgrAI CRCCGGYG 1 cut(s) 1148
SinI GGWCC 3 cut(s) 120, 427, 450
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 737, 906
SmoI CTYRAG 2 cut(s) 737, 906
Sse9I AATT 9 cut(s) 90, 302, 335, 389, 697, 732, 754, 981, 1103
SstI GAGCTC 2 cut(s) 421, 744
StyD4I CCNGG 3 cut(s) 446, 452, 1140
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 1 cut(s) 1367
TaiI ACGT 3 cut(s) 825, 1221, 1421
TaqI TCGA 5 cut(s) 495, 738, 920, 966, 1349
TaqII GACCGA 1 cut(s) 887
TasI AATT 9 cut(s) 90, 302, 335, 389, 697, 732, 754, 981, 1103
TatI WGTACW 3 cut(s) 910, 972, 1367
TauI GCSGC 2 cut(s) 884, 1298
TfiI GAWTC 5 cut(s) 203, 400, 434, 807, 1007
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 2 cut(s) 1144, 1187
TseI GCWGC 4 cut(s) 114, 173, 521, 1261
Tsp45I GTSAC 2 cut(s) 1144, 1187
TspDTI ATGAA 8 cut(s) 45, 51, 84, 203, 332, 386, 425, 1225
TspGWI ACGGA 3 cut(s) 516, 947, 1298
TspRI CASTG 1 cut(s) 1081
VpaK11BI GGWCC 3 cut(s) 120, 427, 450
XapI RAATTY 4 cut(s) 389, 697, 732, 1103
XceI RCATGY 1 cut(s) 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XhoI CTCGAG 1 cut(s) 737
ZrmI AGTACT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.