Rroxscaffold_6G00419380

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018988
Physical Location & Seq
Forward (+)
40871583 .. 40872522
940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419380.1

Sequence Viewer

Length: 438 bp
ATGGCAAGCTCTGGAGTAGTTAAGGTGGTTTGCGTAGTGGTGTTGTTCATGGCGGCACTGTTTTTGGGTAGCGCAAAAGCATTCTTGCAATGCCCTAAATTAGTCGATGATCTGAAACCATGCATTCCCTACCTCAAGGAAGGTGGGACTCCCATGGCGATATGCTGCAACGGGATTAAGACCATCTACGACAAAGATCTGGCCACTCTCCAGGACATTGCTAAGTGTTTGGAGAAATTTATAACTGACGCATTCACCGGTACTTTTTCCAGACGTGCATCAGGGCTTCCCGATTACAGCTCAAACATGTTCTCTATCGGAATAGTCAACCTCAATCTCTGGTCCATCAACCATAAAAGAAATAGACTGAAACAAAATAAAATCCGTCCAATTAAAGATGGTTTGGTACAGTTTAGTTCCAATCTATGTAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

9.26

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018988)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460551
rosa_laevigata RLG00000024993
rosa_roxburghii Rroxscaffold_6G00419380
rosa_rugosa Rorug03G0043700
rosa_samantha Rh3AG101800 Rh3BG105700 Rh3CG107600 Rh3DG107100
rosa_wichuraiana Rw3G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AciI CCGC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 262, 408
AflIII ACRYGT 1 cut(s) 306
AgeI ACCGGT 1 cut(s) 257
AjiI CACGTC 1 cut(s) 275
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 9, 300
AluI AGCT 2 cut(s) 9, 300
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 257
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 203
BbvI GCAGC 1 cut(s) 152
BccI CCATC 3 cut(s) 191, 353, 392
BciT130I CCWGG 1 cut(s) 212
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 54, 166
BlsI GCNGC 2 cut(s) 55, 167
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 33, 194
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 257
Bse3DI GCAATG 2 cut(s) 95, 216
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 153
BseMI GCAATG 2 cut(s) 95, 216
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 257
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 3 cut(s) 80, 123, 251
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 109, 196
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 95, 216
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 109, 196
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 60, 411
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 112, 199
BstMBI GATC 2 cut(s) 109, 196
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 261, 407
CspAI ACCGGT 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 4 cut(s) 49, 120, 154, 307
CviJI RGCY 4 cut(s) 9, 203, 286, 300
CviKI_1 RGCY 4 cut(s) 9, 203, 286, 300
CviQI GTAC 2 cut(s) 261, 407
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 111, 198
DpnII GATC 2 cut(s) 109, 196
EaeI YGGCCR 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 52, 123, 157, 310
FaiI YATR 8 cut(s) 50, 121, 155, 163, 242, 308, 354, 427
FaqI GGGAC 1 cut(s) 160
FatI CATG 4 cut(s) 48, 119, 153, 306
Fnu4HI GCNGC 2 cut(s) 54, 166
Fsp4HI GCNGC 2 cut(s) 54, 166
GlaI GCGC 1 cut(s) 73
GluI GCNGC 2 cut(s) 54, 166
GsuI CTGGAG 2 cut(s) 33, 194
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 74
Hin1II CATG 4 cut(s) 52, 123, 157, 310
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 114, 320
Hpy188III TCNNGA 3 cut(s) 12, 270, 290
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 60, 411
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 88, 123, 168, 278
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 4 cut(s) 52, 123, 157, 310
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 109, 196
LpnPI CCDG 7 cut(s) 185, 197, 224, 267, 271, 283, 325
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 287
MaeII ACGT 1 cut(s) 274
MalI GATC 2 cut(s) 111, 198
MboI GATC 2 cut(s) 109, 196
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 4 cut(s) 98, 236, 390, 430
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 143, 341
Mox20I TGGCCA 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 125
MscI TGGCCA 1 cut(s) 203
MseI TTAA 3 cut(s) 21, 177, 393
Msp20I TGGCCA 1 cut(s) 203
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 3 cut(s) 80, 123, 251
MvaI CCWGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 109, 196
NlaIII CATG 4 cut(s) 52, 123, 157, 310
NsiI ATGCAT 1 cut(s) 125
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PctI GAATGC 3 cut(s) 80, 123, 251
PfoI TCCNGGA 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 2 cut(s) 55, 167
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 306
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 2 cut(s) 262, 408
RsaNI GTAC 2 cut(s) 261, 407
SaqAI TTAA 3 cut(s) 21, 177, 393
SatI GCNGC 2 cut(s) 54, 166
Sau3AI GATC 2 cut(s) 109, 196
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 212
SetI ASST 7 cut(s) 11, 27, 135, 145, 277, 302, 333
SfaNI GCATC 1 cut(s) 287
SinI GGWCC 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 4 cut(s) 98, 236, 390, 430
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 60, 411
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 105
TasI AATT 4 cut(s) 98, 236, 390, 430
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 21, 177, 393
Tru9I TTAA 3 cut(s) 21, 177, 393
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.