Rw3G008660

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0018988
Physical Location & Seq
Reverse (-)
8006725 .. 8007252
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008660.1

Sequence Viewer

Length: 315 bp
ATGGCAAGCTCTGGAGTAGTTAAGGTGGTTTGCGTAGTGGTGTTGTTCATGGCGGCTCTGTTTTTGGGTGGCGCAAAAGCATTCTTACAATGCCCTAAATTAGTCGATGATCTGAAGCCATGCATTCCCTACCTCGAGGAAGGTGGGACTCCCATGGCGACGTGCATCAGGGCTTCCCCGCATTTGCGGGATTCTAGGCTAAGTCCGTCGAAGATTAACCCTTCCTCCGACTGCAAAAAGCATCAAGTGGGAGCTAGGTTTATGAATAAATGGGTGATTATATCGATAGCATGCTCAATTTCTTTTGCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

104

Amino Acids

11.2

Weight (kDa)

9.04

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018988)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460551
rosa_laevigata RLG00000024993
rosa_roxburghii Rroxscaffold_6G00419380
rosa_rugosa Rorug03G0043700
rosa_samantha Rh3AG101800 Rh3BG105700 Rh3CG107600 Rh3DG107100
rosa_wichuraiana Rw3G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 134
AciI CCGC 4 cut(s) 53, 179, 187, 308
AcuI CTGAAG 1 cut(s) 134
AjiI CACGTC 1 cut(s) 162
AluBI AGCT 2 cut(s) 9, 254
AluI AGCT 2 cut(s) 9, 254
Ama87I CYCGRG 1 cut(s) 134
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 134
BfaI CTAG 2 cut(s) 195, 255
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 162
BmsI GCATC 2 cut(s) 174, 250
BpmI CTGGAG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
BseCI ATCGAT 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 153
BshVI ATCGAT 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 2 cut(s) 80, 123
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 4 cut(s) 53, 179, 187, 308
BspDI ATCGAT 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 7, 292
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 284
BsuTUI ATCGAT 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 7, 292
CfoI GCGC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 284
CviAII CATG 4 cut(s) 49, 120, 154, 291
CviJI RGCY 6 cut(s) 9, 56, 118, 173, 199, 254
CviKI_1 RGCY 6 cut(s) 9, 56, 118, 173, 199, 254
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 52, 123, 157, 294
FaiI YATR 6 cut(s) 50, 121, 155, 263, 281, 292
FaqI GGGAC 1 cut(s) 160
FatI CATG 4 cut(s) 48, 119, 153, 290
FauI CCCGC 2 cut(s) 180, 186
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 195, 255
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 33
HhaI GCGC 1 cut(s) 74
Hin1II CATG 4 cut(s) 52, 123, 157, 294
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 148, 191
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 114, 229
Hpy188III TCNNGA 1 cut(s) 12
Hpy99I CGWCG 2 cut(s) 163, 211
HpyAV CCTTC 2 cut(s) 134, 231
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 123, 165, 234
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 4 cut(s) 52, 123, 157, 294
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 1 cut(s) 154
LweI GCATC 2 cut(s) 174, 250
MaeI CTAG 2 cut(s) 195, 255
MaeII ACGT 1 cut(s) 161
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 223
MluCI AATT 2 cut(s) 98, 297
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 3 cut(s) 130, 143, 235
Mph1103I ATGCAT 1 cut(s) 125
MseI TTAA 2 cut(s) 21, 216
Mva1269I GAATGC 2 cut(s) 80, 123
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 109
NlaIII CATG 4 cut(s) 52, 123, 157, 294
NsiI ATGCAT 1 cut(s) 125
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 134
PctI GAATGC 2 cut(s) 80, 123
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 134
SaqAI TTAA 2 cut(s) 21, 216
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 142
SetI ASST 7 cut(s) 11, 27, 135, 145, 164, 256, 260
SfaNI GCATC 2 cut(s) 174, 250
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 294
Sse9I AATT 2 cut(s) 98, 297
SsiI CCGC 4 cut(s) 53, 179, 187, 308
SspMI CTAG 2 cut(s) 195, 255
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 164
TaqI TCGA 4 cut(s) 105, 135, 209, 284
TasI AATT 2 cut(s) 98, 297
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 21, 216
Tru9I TTAA 2 cut(s) 21, 216
TspDTI ATGAA 2 cut(s) 37, 278
TspGWI ACGGA 1 cut(s) 195
XceI RCATGY 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 195, 255
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.