Rh3DG107100

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018988
Physical Location & Seq
Reverse (-)
8585477 .. 8585791
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG107100.1

Sequence Viewer

Length: 315 bp
ATGGCAAGCTCTGGAGTAGTTAAGGTGGTTTGCGTAGTGGTGTTGTTCATGGCGGCTCTGTTTTTGGGTGGCGCAAAAGCATTCTTACAATGCCCTAAATTAGTCCATGATCTGAAGCCATGCATTCCCTACCTCGAGGAAGGTGGGACTCCCATGGCGGTATGCTGCAACGGGATTAAGACCATCTACGACAAAGATCTGGCCACTCTCCAGGACATTGCTACGTGTTTGGAGAAATTGATAACTGACGCATTCACCGGTACTTTTTCCAGACGTGCATCAGGGCTTCCCAGCATTTGCGGGATTCTAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

104

Amino Acids

10.94

Weight (kDa)

7.53

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 13 - 101 7.9e-06 Probable lipid transfer
Tryp_alpha_amyl PF00234 31 - 102 2.1e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018988)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460551
rosa_laevigata RLG00000024993
rosa_roxburghii Rroxscaffold_6G00419380
rosa_rugosa Rorug03G0043700
rosa_samantha Rh3AG101800 Rh3BG105700 Rh3CG107600 Rh3DG107100
rosa_wichuraiana Rw3G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 134
AciI CCGC 3 cut(s) 53, 158, 300
AcoI YGGCCR 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 257
AjiI CACGTC 1 cut(s) 275
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 165
AsiGI ACCGGT 1 cut(s) 257
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 203
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 1 cut(s) 308
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 54, 166
BlsI GCNGC 2 cut(s) 55, 167
Bme1390I CCNGG 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 33, 194
BsaAI YACGTR 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 152
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 3 cut(s) 80, 123, 251
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 2 cut(s) 109, 196
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 3 cut(s) 53, 158, 300
BspANI GGCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 109, 196
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 112, 199
BstMBI GATC 2 cut(s) 109, 196
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 261
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 4 cut(s) 49, 107, 120, 154
CviJI RGCY 6 cut(s) 9, 56, 118, 203, 286, 312
CviKI_1 RGCY 6 cut(s) 9, 56, 118, 203, 286, 312
CviQI GTAC 1 cut(s) 261
DpnI GATC 2 cut(s) 111, 198
DpnII GATC 2 cut(s) 109, 196
EaeI YGGCCR 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 52, 110, 123, 157
FaiI YATR 5 cut(s) 50, 108, 121, 155, 163
FaqI GGGAC 1 cut(s) 160
FatI CATG 4 cut(s) 48, 106, 119, 153
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 54, 166
Fsp4HI GCNGC 2 cut(s) 54, 166
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 73
GluI GCNGC 2 cut(s) 54, 166
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 2 cut(s) 33, 194
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 74
Hin1II CATG 4 cut(s) 52, 110, 123, 157
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 148, 304
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 12, 270
HpyAV CCTTC 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 224, 274
HpyCH4V TGCA 3 cut(s) 123, 168, 278
HpySE526I ACGT 2 cut(s) 224, 274
Hsp92II CATG 4 cut(s) 52, 110, 123, 157
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 109, 196
LpnPI CCDG 7 cut(s) 185, 197, 224, 267, 271, 283, 304
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 287
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 224, 274
MalI GATC 2 cut(s) 111, 198
MboI GATC 2 cut(s) 109, 196
MflI RGATCY 1 cut(s) 196
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 2 cut(s) 98, 236
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 130, 143
Mox20I TGGCCA 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 125
MscI TGGCCA 1 cut(s) 203
MseI TTAA 2 cut(s) 21, 177
Msp20I TGGCCA 1 cut(s) 203
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 3 cut(s) 80, 123, 251
MvaI CCWGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 153
NdeII GATC 2 cut(s) 109, 196
NlaIII CATG 4 cut(s) 52, 110, 123, 157
NsiI ATGCAT 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 134
PctI GAATGC 3 cut(s) 80, 123, 251
PfeI GAWTC 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 2 cut(s) 55, 167
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 210
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 2 cut(s) 21, 177
SatI GCNGC 2 cut(s) 54, 166
Sau3AI GATC 2 cut(s) 109, 196
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 212
SetI ASST 6 cut(s) 11, 27, 135, 145, 227, 277
SfaNI GCATC 1 cut(s) 287
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 2 cut(s) 98, 236
SsiI CCGC 3 cut(s) 53, 158, 300
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 2 cut(s) 227, 277
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 98, 236
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 21, 177
Tru9I TTAA 2 cut(s) 21, 177
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.